New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1130290 =	60 (1.500)	6 (0.150)	4/304	NT	9.8%	coding (106/783 nt)	flgG	flagellar component of cell‑distal portion of basal‑body rod
	?	CP009273	1130906 =	51 (1.300)					coding (722/783 nt)	flgG	flagellar component of cell‑distal portion of basal‑body rod

GCCCTGCCCTTTAATCGCGACATCTTTGCTGTTGTTGGTCTGCGACAGGTTTCCCTGGCTGTGTAAGCGTTCAGTGGCGACCGGGCGTACCCCCGTGCCGATTTGTAATCCGGAGGGTAAGGTGGTTTGTTCGGAAGACTGTGCCCCCGGCTGGCGAATGGTTTGATAAAGCAGATCTTCAAACACCGCGCGCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1130487‑1130290 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgAAATCAACAGTAAAGCGGTGTCCACCACCGATCAGATGCTGCAAAAACTGACGCAACTCTAAGGCTTAACCGGTGGCAGGTTCACCGGTTTACTGATTTTTGAAGATGATAGCCATGCAAAAAAACGCTGCGCATACTTATGCCA  >  CP009273/1130906‑1131050                                                                                                                                                                                                                                                                                                                                                         GCCCTGCCCTTTAATCGCGACATCTTTGCTGTTGTTGGTCTGCGACAGGTTTCCCTGGCTGTGTAAGCGTTCAGTGGCGACCGGGCGTACCCCCGTGCCGATTTGTAATCCGGAGGGTAAGGTGGTTTGTTCGGAAGACTGTGCCCCCGGCTNGCGAATGGTTTGATAAAGCAGATCTTCAAACACCGCGCGCTGACGAAATCAACAGTAAAGCGGTGTCCACCACCGATCAGATGCTGCAAAAACTGACGCAACTATAAGGCTTAACCGGTGGC                                                                      >  1:622207/1‑275 GCCCTGCCCTTTAATCGCGACATCTTTGCTGTTGTTGGTCTGCGACAGGTTTCCCTGGCTGTGTAAGCGTTCAGTGGCGACCGGGCGTACCCCCGTGCCGATTTGTAATCCGGAGGGTAAGGTGGTTTGTTCGGAAGACTGTGCCCCCGGCTGGCGAATGGTTTGATAAAGCAGCTCTTCAAACACCGCGCGGTGACGAAACAAACAGTAAAGCGGTGTCCACCACCGNTCAGATGCTGCAAAAACTTACTAAACTCTAAAACCTAACCctttc                                                                       >  2:452713/1‑269 GCCCTGCCCTTTAATCGCGACATCTTTGCTGTTGTTGGTCTGCGACAGGTTTCCCTGGCTGTGTAAGCGTTCAGTGGCGACCGGGCGTACCCCCGTGCCGATTTGTAATCCGGAGGGTAAGGTGGTTTGTTCGGAAGACTGTGCCCCCGGCTGGCGAATGGTTTGATAAAGCAGATCTTCAAACACCGCGCGCTGACGAAATCAACAGTAAAGCGGTGTCCACCACCGATCAGATGCTGCAAAAACTGACGCAACTCTAAGGCTTAACCGGTGGC                                                                      >  1:698629/1‑275     TGCCCTTTAATCGCGACATCTTTGCTGTTGTTGGTCTGCGACAGGTTTCCCTGGCTGTGTAAGCGTTCAGTGGCGACCGGGCGTACCCCCGTGCCGATTTGTAATCCGGAGGGTAAGGTGGTTTGTTCGGAAGACTGTGCCCCCGGCTGGCGAATGGTTTGATAAAGCAGATCTTCAAACACCGCGCGCTGACGAAATCAACAGTAAAGCGGTGTCCACCACCGATCAGATGCTGCAAAAACTGACGCAACTCTAAGGCTTAACCGG                                                                          <  1:452720/267‑1                                         TGCGACAGGTTTCCCTGGCTGTGTAAGCGTTCAGTGGCGACCGGGCGTACCCCCGTGCCGATTTGTAATCCGGAGGGTAAGGTGGTTTGTTCGGAAGACTGTGCCCCCGGCTGGCGAATGGTTTGATAAAGCAGATCTTCAAACACCGCGCGCTGACGAAATCAACAGTAAAGCGGTGTCCACCACCGATCAGATGCTGCAAAAACTGACGCAACTCTAAGGCTTAACCGGTGGCAGGTTCACCGGTTTACTGATTTTTGAAGATGATAGCCATG                              <  2:698615/275‑1                                                                     gtcgaggGGCGAACGGGCGTGCCCCCGTGCCGATTTGTCATCCGGAGGGTAAGGTGGTTTGTTCGGAAGACTGTGCCCCCGGCTGGCGAATGGTTTGATAAAGCAGATCTTCAAACACCGCGCGCTGACGAAATCAACAGTAAAGCGGTGTCCACCACCGATCAGATGCTGCAAAAACTGACGCAACTCTAAGGCTTAACCGGTGGCAGGTTCACCGGTTTACTGATTTTTGAAGATGATAGCCATGCAAAAAAACGCTGCGCATACTTATGCCA  <  2:622193/268‑1                                                                                                                                                                                                                                                                                                                                                         GCCCTGCCCTTTAATCGCGACATCTTTGCTGTTGTTGGTCTGCGACAGGTTTCCCTGGCTGTGTAAGCGTTCAGTGGCGACCGGGCGTACCCCCGTGCCGATTTGTAATCCGGAGGGTAAGGTGGTTTGTTCGGAAGACTGTGCCCCCGGCTGGCGAATGGTTTGATAAAGCAGATCTTCAAACACCGCGCGCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1130487‑1130290 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgAAATCAACAGTAAAGCGGTGTCCACCACCGATCAGATGCTGCAAAAACTGACGCAACTCTAAGGCTTAACCGGTGGCAGGTTCACCGGTTTACTGATTTTTGAAGATGATAGCCATGCAAAAAAACGCTGCGCATACTTATGCCA  >  CP009273/1130906‑1131050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.