New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1397368	22 (0.550)	5 (0.130)	5/290	NT	18.3%	coding (145/1446 nt)	abgB	p‑aminobenzoyl‑glutamate hydrolase, B subunit
	?	CP009273	= 1398274	24 (0.640)					coding (549/1311 nt)	abgA	p‑aminobenzoyl‑glutamate hydrolase, A subunit

TATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATGTAGGTTGCGCGCAACCTGCTTGCTGACTTAAACCTGCCAGGGCGTCATATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATAAAACGATAGATTTCCTGCATCAGATACCTCGCGTCCAGGGAAAATTGAGCGCGGTGCGCGCCAGCGTTTCGACGGCAATAGCGAGAACCTGCTCGTCAAAATCGAATTTTTCGTTGTGATGACCTGCCGCCAGCTGTGTGCCAAA  >  CP009273/1397144‑1397637                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                              tATTGCAGCTGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATGTAGTTTGCGCGCAACCTGCTTGCTGACTTAAACCTGNCAGGGCGTCAGTTTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAAc                                                                                                                                                                                                                                <  1:678915/272‑1 (MQ=255)           gCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATGTAGGTTGCGCGCAACCTGCTTGCTGACTTAAACCTGCCAGGGCGTCATATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCCGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTATTCAAAACGTGTTTCTGtat                                                                                                                                                                                                                    >  1:291571/1‑274 (MQ=255)                                 aaTTGTGTCCGCAACCGGTACCATTTTCACCGGGCGTCACGGATGTAGGTTGCGCGCAACCTGCTTGCTGACTTAAACCTGCCAGGGCGTCAGATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCGATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAata                                                                                                                                                                                             <  1:288031/275‑1 (MQ=255)                                  aTTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATGTAGGTTGCGCGCAACCTGCTTGCTGACTTAAACCTGCCAGGGCGTCATATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACTGGGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAAAACTCTTCAAAACGGGTTTCTGGATGATCCAAGATTTGAACGGCAatat                                                                                                                                                                                            >  1:385380/1‑275 (MQ=255)                                                                                     cgcgcAACCTGCTTGCTGACTTAAACCTGCCAGGGCGTCATATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCa                                                                                                                                                                                                >  1:586666/1‑220 (MQ=255)                                                                                         cAACCTGCTTGCTGACTTAAACCTGCCAGGGCGTCATATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAatat                                                                                                                                                                                            <  2:586653/220‑1 (MQ=255)                                                                                         cAACCTGCTTGCTGACTTAAACCGGCCAGGGCGTCATATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCACACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATCGGCTTCAATCGCAt                                                                                                                                                           <  1:407976/253‑1 (MQ=255)                                                                                                          tAAACCTGCCAGGGCGGCATATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGAggaaggtacgcgtggcgcgcgggcgatggtcgatgcaggtgtcgtagatgatgttgattattttactgccgtgcacattggcactggcgtacctgcgggcaccgtggtgtgcggcagtgataattttatgggaaccaccaaatttgacgctgcc                                                                                                                     >  1:267529‑M1/1‑120 (MQ=255)                                                                                                                                                tAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATNGGCTTCAATCGCAtcgtc                                                                                                                                                       >  1:493409/1‑202 (MQ=255)                                                                                                                                                    cGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATa                                                                                                                                                   <  2:493400/202‑1 (MQ=255)                                                                                                                                                     ggTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAatat                                                                                                                                                                                            >  2:270348/1‑160 (MQ=255)                                                                                                                                                         tGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGt                                                                                                                                                                                        <  1:270352/160‑1 (MQ=255)                                                                                                                                                              tGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGAggaaggtacgcgtggcgcgcgggcgatggtcgatgcaggtgtcgtagatgatgttgattattttactgccgtgcacattggcactggcgtacctgcgggcaccgtggtgtgcggcagtgataattttatggcaaccaccaaatttgacgcgcacttcaccggtaccgccgctcacgca                                                                                             <  1:193269‑M1/246‑179 (MQ=255)                                                                                                                                                              tGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGAggaaggtacgcgtggcgcgcgggcgatggtcgatgcaggtgtcgtagatgatgttgattattttactgccgtgcacattggcactggcgtacctgcgggcaccgtggtgtgcggcagtgataattttatggcaaccaccaaatttgacgcgcacttcaccggtaccgccgctcacgca                                                                                             >  2:193267‑M1/1‑68 (MQ=255)                                                                                                                                                                                     aTTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAg                                                                                                                                                                                                                                                                         >  1:632205/1‑51 (MQ=255)                                                                                                                                                                                      tttGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAAAATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATAAAACGATAGATTTCCTGCATCAGAt                                                                                                                          >  2:324457/1‑193 (MQ=255)                                                                                                                                                                                         gggATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGcc                                                                                                                                                                                                                                                                     <  2:632191/51‑1 (MQ=255)                                                                                                                                                                                          ggATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAAAATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATAAAACGATAGATTTCCTGCATCAGATACCt                                                                                                                      <  1:324463/193‑1 (MQ=255)                                                                                                                                                                                            atatTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCaa                                                                                                                                                                                               >  2:581284/1‑118 (MQ=255)                                                                                                                                                                                                tGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATc                                                                                                                                                                                           <  1:581297/118‑1 (MQ=255)                                                                                                                                                                                                    tACGTTGCGGGTAACGGTGAAGGCTGCAGAGTCCAGCGCCGAAGCCAGATGCTCCGATGACCAGAACTCTTCAAAACGTGTTTCTGGATGAACGCAGATTTGATCGGCAATATCGGTATAAGGGTGGCGAGCGGCTTCAATCGAATCGACGATAAAACGATAAATTTCCTGCTTCAGATACCTCGCGTCCAGGGAAAATTGAGCGCGGAGCGCGCCAGCGTTTCGACGGCAATAGCGAGACACGGGTCGTCAAAATCGACTTATGCGtggat                             >  2:161743/1‑268 (MQ=255)                                                                                                                                                                                                    tACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATAAAACGATAGATTTCCTGCATCAGATACCTCGCGTCCAGGGAAAATTGAGCGCGGTGCGCGCCAGCGTTTCGACGGCAATAGCGAGAACCTGATCGTCAAAATCAAATTTTTCGTtgtg                             >  1:61367/1‑272 (MQ=255)                                                                                                                                                                                                           cGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCa                                                                                                                                                                                                >  2:515065/1‑102 (MQ=255)                                                                                                                                                                                                              gTAACGGTGAAGCCTGCAGAggaaggtacgcgtggcgcgcgggcgatggtcgatgcaggtgtcgtagatgatgttgattattttactgccgtgcacattggcactggcgtacctgcgggcaccgtggtgtgcggcagtgataattttatggcaaccaccaaattcgacgcgcacttcaccggtaccgccgctcacgcaggcgcaaaaccatacgacggtcacaatgccgtgttggcggcagcag                                               >  2:730937‑M1/1‑20 (MQ=255)                                                                                                                                                                                                               tAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAatat                                                                                                                                                                                            <  1:515074/102‑1 (MQ=255)                                                                                                                                                                                                                  cGGTGAAGCCTGCAGAggaaggtacgcgtggcgcgcgggcgatggtcgatgcaggtgtcgtagatgatgttgattattttactgccgtgcacattggcactggcgtacctgcgggcaccgtggtgtgcggcagtgataattttatggcaaccaccaaatttgacgcgcacttcaccggtaccgccgctcacgcaggcgcaaaaccagaagacggtcacaatgccttgttggcgacagcacaagc                                           <  1:730951‑M1/244‑229 (MQ=255)                                                                                                                                                                                                                         gCCTGCAGAggaaggtacgcgtggcgcgcgggcgatggtcgatgcaggtgtcgtaga                                                                                                                                                                                                                               <  2:7957‑M1/57‑49 (MQ=255)                                                                                                                                                                                                                            tGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATAAAACGATAGATTTCCTGCAt                                                                                                                               >  1:324585/1‑150 (MQ=255)                                                                                                                                                                                                                             gCAGAggaaggtacgcgtggcgcgcgggcgatggtcgatgcaggtgtcgtagatgatgttgattattttactgccgtgcacattggcactggcgtacctgcgggcaccgtggtgtgcggcagtgataattttatggcaaccaccaaatttgacgcgcacttcaccggtaccgccgctcacgcaggcgccaaaccagaagacggtcacaatgccttgttggcggccgcacaagccactcttgcactgcatgcaatacccccgcaaagcaaaggag  >  1:341512‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                              cAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATa                                                                                                                                                   >  1:115602/1‑128 (MQ=255)                                                                                                                                                                                                                                gATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATAAAACGATAGATTTCCTGCATCAGa                                                                                                                           <  2:324579/150‑1 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                              TATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATGTAGGTTGCGCGCAACCTGCTTGCTGACTTAAACCTGCCAGGGCGTCATATTCTCCCAGCAGGGCGATAACCGGTTTGCCTTGACCAAACGAAGCAATAAAGGCATTTGGGATATTGCCTACGTTGCGGGTAACGGTGAAGCCTGCAGATTCCAGCGCCGAAGCCAGATGCTCCGCTGACCAGAACTCTTCAAAACGTGTTTCTGGATGATCCCAGATTTGATCGGCAATATCGGTATAACGTTGGCGATCGGCTTCAATCGCATCGTCGATAAAACGATAGATTTCCTGCATCAGATACCTCGCGTCCAGGGAAAATTGAGCGCGGTGCGCGCCAGCGTTTCGACGGCAATAGCGAGAACCTGCTCGTCAAAATCGAATTTTTCGTTGTGATGACCTGCCGCCAGCTGTGTGCCAAA  >  CP009273/1397144‑1397637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.