New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2322526	33 (0.820)	6 (0.160)	4/292	NT	15.8%	coding (751/1650 nt)	yfaQ	tandem DUF2300 domain protein, putative host defense protein
	?	CP009273	= 2322885	33 (0.870)					coding (392/1650 nt)	yfaQ	tandem DUF2300 domain protein, putative host defense protein

TGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTCAGTTTGCCCTTTTCGCTCAGTAAGGTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGGTTTTCACCCGTACCCGACTACCGAGCATGGATGCGACACCGATTTTCGCCTCGTCCAGCACCACATCCAGTAAGACTTCCTGAGCTTTGTTTTGCGCGGGTAAC  >  CP009273/2322292‑2322794                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                             tGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTCAGTTTGCCCTTTTCGCTCAGTAAGGTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTACACGTCACACGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGAAATCGTTTCCGCTGTGATTTTCTTCTGCGGATCGCGGGTAAACAGCTGCACCTCTACACATTGCCCACTGGCAA‑CCTGAGACGGACCGGGCAAAACCCGATTAAGCAcc                                                                                                                                                                                                                                            >  2:686530/1‑269 (MQ=255) tGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTCAGTTTGCCCTTTTCGCTCAGTAAGGTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGc                                                                                                                                                                                                                                       >  1:90550/1‑274 (MQ=255)    cAACTTACTTTTCACGTTCGGGTTGCGACTGCAATTTCAGTTTGCCCTTTTCGCTCAGTAAGGTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCATCGTCGCATaa                                                                                                                                                                                                                                   <  1:716825/275‑1 (MQ=255)              ttCACGTTCGTGATGCTATTGCTATTTCATTTTGCCCTTTTCGCTCAGTAAGGTCGTCTCACCGTGGCTGACAAACGGAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCNATTAAGTACGTAGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCATCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTa                                                                                                                                                                                                                         <  1:686544/275‑1 (MQ=255)                                   tctttgcAGTTCNCCCTTTTCCTTAAGTAAGTTCGTCTCCTCGTGGCTGACAAACGTAATGTGGTTACCATTAGTACACGTCACCCGATAGCTCCCATTAAGTACGCCGGGATTTACTCCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGAGAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACt                                                                                                                                                                                                      <  2:532635/267‑1 (MQ=255)                                             ttttcattttCGCTCAGTAAGGTCGTCTCCCCGTGGCTGACAATCGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCca                                                                                                                                                                                          <  2:90549/269‑1 (MQ=255)                                             tttcccTTTTCGCTCAGTAAGGTCGTCTCACCGTGGCTGACAAACGTAATGTGTTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCca                                                                                                                                                                                          <  1:466411/272‑1 (MQ=255)                                                                                                                    cacaCGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTg                                                                                                                                                                                                                                                                >  2:29810/1‑134 (MQ=255)                                                                                                                       acGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACtt                                                                                                                                                                                                     >  1:182270/1‑189 (MQ=255)                                                                                                                        cGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCaa                                                                                                                                                                                                                                                            <  1:29811/134‑1 (MQ=255)                                                                                                                           tgtcgcCCATTAAGTACGCCGGGATTTACTGCCGTCATACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGAGCAAACAGCTCCACCGCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAg                                                                                                                                                                                                 <  2:182268/187‑1 (MQ=255)                                                                                                                                  cATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCCA‑CCTGCGTCGGCGCTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTa                                                                                                                                                                                               <  1:38956/185‑1 (MQ=255)                                                                                                                                   aTTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGtt                                                                                                                                                                                                                             >  1:201653/1‑154 (MQ=255)                                                                                                                                     tAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCAGTGATTTTCTTCAGCGGATAGCGGGCCATCCTCTCCACCTCTACACATTGCCCACTGGCAA‑CCGGCGTCGGCACTGGCACACCACGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCCCTGCCAGTAACCcaaca                                                                                                                                                                                       >  2:368230/1‑187 (MQ=255)                                                                                                                                       aGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTa                                                                                                                                                                                                                         <  2:201651/154‑1 (MQ=255)                                                                                                                                         tACGCCGGGATTTACTGTCGTCGTACTCTTTTCCGCTGTGATTTGTGTCAGAGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGgt                                                                                                                                                                                   <  1:368237/190‑1 (MQ=255)                                                                                                                                             ccGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGc                                                                                                                                                                                                                                       >  1:136847/1‑134 (MQ=255)                                                                                                                                                 gATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATaa                                                                                                                                                                                                                                   <  2:136846/134‑1 (MQ=255)                                                                                                                                                                             tgtgATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑Cagcgtcaggcacctgcgtggttagcgtctctgactacgctgaagcc                                                                                                                                                                                                                                >  1:675695‑M1/1‑63 (MQ=255)                                                                                                                                                                                 aTTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑Cagcgtcaggcacctgcgtggttagcgtctctgactacgctgaagccagaa                                                                                                                                                                                                                            <  2:675681‑M1/109‑51 (MQ=255)                                                                                                                                                                                       ttcAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAAccc                                                                                                                                                                                           >  2:650098/1‑136 (MQ=255)                                                                                                                                                                                           gCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGcc                                                                                                                                                                                                   >  2:155787/1‑124 (MQ=255)                                                                                                                                                                                           gCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAg                                                                                                                                                                                       <  1:650112/136‑1 (MQ=255)                                                                                                                                                                                               aTAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTa                                                                                                                                                                                               <  1:155789/124‑1 (MQ=255)                                                                                                                                                                                                        aaaCAGCTCCACCTCTACACATTGCCCACTGGCAACCtgcgtcaggcacctgcgtggttagcgtctc                                                                                                                                                                                                                                                >  1:59001‑M1/1‑37 (MQ=255)                                                                                                                                                                                                        aaaCAGCTCCACCTCTACACATTGCCCACTGGCAA‑Cagcgtcaggcacctgcgtggttagcgtctc                                                                                                                                                                                                                                                >  1:449653‑M1/1‑36 (MQ=255)                                                                                                                                                                                                            aGCTCCACCTCTACACATTGCCCACTGGCAACCtgcgtcaggcacctgcgtggttagcgtctctgac                                                                                                                                                                                                                                            <  2:59000‑M1/67‑35 (MQ=255)                                                                                                                                                                                                            aGCTCCACCTCTACACATTGCCCACTGGCAA‑Cagcgtcaggcacctgcgtggttagcgtctctgac                                                                                                                                                                                                                                            <  2:449646‑M1/66‑35 (MQ=255)                                                                                                                                                                                                              cTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGGTTTTCa                                                                                                    >  2:314537/1‑200 (MQ=255)                                                                                                                                                                                                                  aCCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGGTTTTCACCCg                                                                                                <  1:314542/200‑1 (MQ=255)                                                                                                                                                                                                                      ctACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGt                                                                                                                                                                                                            >  1:71305/1‑88 (MQ=255)                                                                                                                                                                                                                          acaTTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCa                                                                                                                                                                                                        <  2:71304/88‑1 (MQ=255)                                                                                                                                                                                                                              ttcccACTGCCCA‑CCTGCATCGGCCCTTGCTAAACTCGACTAAGCACCGTCGCATAACGGGTTAGTACCTCCTTGCGTGTGCCACTGCCAGTAACCCACAGCGGTTTACCCTCGGTTCCCCAGCCAGCAAAACCACCCTGACGCATATACCGATTATCATCTGCCAACCAACCCCAGACATTCAACCGTTCCCTACTACCAAGCATGCATGCGCACCCGATTTCCGCCNCCACCCCCACCACACACAANACCACTTCCTTANCNTtttttttcta         >  2:394967/3‑271 (MQ=255)                                                                                                                                                                                                                              tGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGt                                                                                                                                                                                                >  2:384053/1‑92 (MQ=255)                                                                                                                                                                                                                              tGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGATTTTCACCCGTACCCGACTACCGAGCATGGATGCGACACCGATTTTCGCCTCGTCCAGCACCACATCCAGTAAGACTTCCTGAGCTTTGTTTTgcgc         >  1:394330/1‑275 (MQ=255)                                                                                                                                                                                                                                cccACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGGTTTTCACCCGTACCCGACTa                                                                                      <  1:7936/196‑1 (MQ=255)                                                                                                                                                                                                                                  cACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAAcc                                                                                                                                                                                            <  1:384060/92‑1 (MQ=255)                                                                                                                                                                                                                                   aCTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGGTTTTCACCCGTACCCGACTACCGAGCATGGATGCGACACCGATTTTCGCCTCg                                                     >  2:617995/1‑226 (MQ=255)                                                                                                                                                                                                                                    cTGGCAA‑Cagcgtcaggcacctgcgtggttagcgtctctgactacgctgaagccagaaacctcggtaacggttaaatcgctgcttgattcattagcgacgttacccgcgcaaaacaaagctcaggaa                                                                                                                                                       <  1:44191‑M1/127‑120 (MQ=255)                                                                                                                                                                                                                                     tGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGGTTTTAACCCGTACCCGACTACCGAGCATGGATGCGACACCGATTTTCGCCTCGTCCAGCACCACATCCAGTAAGCCTTCCTTAGCTTTGTTTGTGGCGGGTGAc  >  2:736586/1‑275 (MQ=255)                                                                                                                                                                                                                                       gCAA‑Cagcgtcaggcacctgcgtggttagcgtctctgactacgctgaagccagaaacctcggtaacggttaaatcgctgcttgattcattagcgacgttacccgcgcaaaacaa                                                                                                                                                                 >  2:506533‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                       gCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACACACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGGTTTTCACCCGTACCCGACTACCGAGCATGGATGCGACACCGATTTTCGCCTCGTCCa                                                 <  1:618008/226‑1 (MQ=255)                                                                                                                                                                                                                                            cagcgtcaggcacctgcgtggttagcgtctctgactacgctgaagccagaaacctcggtaacggttaaatcgctgcttgattcattagcgacgttacccgcgcaaaacaaagct                                                                                                                                                             <  1:506542‑M1/114‑114 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                             TGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTCAGTTTGCCCTTTTCGCTCAGTAAGGTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGCCGGGATTTACTGCCGTCGTACTCTTTTCCGCTGTGATTTTCTTCAGCGGATAGCGGGCAAACAGCTCCACCTCTACACATTGCCCACTGGCAA‑CCTGCGTCGGCACTGGCAAAACCCGATTAAGCACCGTCGCATAACGGGTTAGTACCGTTTTGCTGGTGCCACTGCCAGTAACCCACAGCGGTGTACCATCGGTTAACCAGCCAGCAAAACCACCCTGACGGATTTCCTGTTTATCATCGGCAAACCAGCTCCAGGTTTTCACCCGTACCCGACTACCGAGCATGGATGCGACACCGATTTTCGCCTCGTCCAGCACCACATCCAGTAAGACTTCCTGAGCTTTGTTTTGCGCGGGTAAC  >  CP009273/2322292‑2322794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.