New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2581209 =	42 (1.050)	3 (0.080)	3/298	NT	7.5%	coding (256/3114 nt)	acrD	aminoglycoside/multidrug efflux system
	?	CP009273	2581371 =	34 (0.880)					coding (418/3114 nt)	acrD	aminoglycoside/multidrug efflux system

TTCTTTATTGATCGCCCCATTTTTGCCTGGGTGCTGGCAATCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATGGATAAACAGGATATTGCTGATTATGTTGCCAGTAATATTCAGGACCCGTTAAGCCGCGTGAATGGCGTCGGGGATA  >  CP009273/2580963‑2581476                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                            ttCTTTATTGATCGCCCCATTTTTGCCTGGGTGCTGGCAATCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTc                                                                                                                                                                                                                                                                          <  2:87753/250‑1 (MQ=255)             cGCCCCATTTTTGCCTGGGTGCTGGCAATCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACTCAGGTTATCGAGCAAAATNTGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGa                                                                                                                                                                                                                                     >  1:536098/1‑275 (MQ=255)                                                           gTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCCGCAATCaac                                                                                                                                                                                        >  1:1712/1‑272 (MQ=255)                                                                               ttGCCCCTTGACAACTTCCCCGTGCCCGCGCCCCCGAATGTGCGAGTCACCGCTAACGATCCCGGCCCATCGGTCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGCGCAAAATATGACCGGCCTCGATAATCTCATTTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGc                                                                                                                                                                   <  2:313047/275‑1 (MQ=255)                                                                                 gCCCGTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCGCAGAGCAGTGGCACCGGTCAGGCATCTGTCAc                                                                                                                                                                                                                                                             >  1:596058/1‑183 (MQ=255)                                                                                     gTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTa                                                                                                                                                                                                                                                         <  2:596045/183‑1 (MQ=255)                                                                                                     aTCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCAAGTATATGTCATCCCAGAGAAGTGGCACCGGGCAGGCATCTGTCACTTTAAGTTTTACAGCAGGCACCGAACCGGAAGAAACCGGGCAGCAAGTACAAAACAAGCAGCAACCAGCATTGCGCAAGTTACCGCAGGCGGGGACAAATCAggcctcgaa                                                                                                                                              >  2:611542/1‑267 (MQ=255)                                                                                                         cgcgCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCCAAATATGANCGGCCTCGATAATCTCAAGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAgg                                                                                                                                                                    <  1:611555/248‑1 (MQ=255)                                                                                                                      atattgcaaaccataggcatcgataccccccacgccaatcacgcggcttaacgggtccttaatattagtggcaacataatcagcaatatcctgtttatccatcgaaccatcggtagagacgaaggcaatGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAACACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGa                                                                                                                            >  2:653802‑M1/130‑275 (MQ=255)                                                                                                                           gcgaaccataggcatcgatatccccgacgccattcacgcggcttaacgggtcctgaatattactggcaacataatcagcaatatcctgtttatccatcgaaccatcggtagagacgaaggcaatGGTCAGGCATCTGTCACTTTAAGTTTTAGAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGAAACCa                                                                                                                       <  1:653816‑M1/151‑1 (MQ=255)                                                                                                                            gTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATAGGACAGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCa                                                                                                                       <  1:12175/274‑1 (MQ=255)                                                                                                                                 cGCTAACTATCCAGGCGCGTCGGCCCCGACGCTGGAAAACACCGTGACCCAGGATATCGAGCAAAAAATGACCGGCCTCGATAATCTCATGTATATTTCATCTCAGAGCAGTGGCACCGGTCAGGCAACTGTCACTTTAAGTTTTAAAGCAGGCACCGACCAGGAAGAAGCCGTGCAGCAAGTACAAAACCAGCTGAAATCAGCCAAGCGAAAGTAACCACAGGCCGTACAAACTAAGGGCGCGAGGGGACGTAACGCCggtcaaacaagacta                                                                                                                  >  2:507170/1‑261 (MQ=255)                                                                                                                                            cccgctcaacGGCCCAGCCGCGGTAAAGAACCTTAACCCAGGTTATCGAGCAAAAGATGACCGGCCTCGTTATGCGCATGTATATGGAATCTAAGGGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCa                                                                                                           <  2:1712/261‑1 (MQ=255)                                                                                                                                              ggCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCt                                                                                                                                                                                                 >  2:56797/1‑182 (MQ=255)                                                                                                                                                  cATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCaa                                                                                                                                                                                             <  1:56798/182‑1 (MQ=255)                                                                                                                                                    tCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGAAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGGAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGtctc                                                                                              >  1:390513/1‑275 (MQ=255)                                                                                                                                                                gcggcttaacgggtcctgaatattactggcaacataatcagcaatatcctgtttatccatcgaaccatcggtagagacgaaggcaatGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCg                                                                                                                                <  1:67307‑M1/142‑1 (MQ=255)                                                                                                                                                                 tGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATATCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGATTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAAAACaaaa                                                                                                                                                                                                       >  2:207593/1‑157 (MQ=255)                                                                                                                                                                     aaaCACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAg                                                                                                                                                                                                   <  1:207595/157‑1 (MQ=255)                                                                                                                                                                      aaCACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATgg                                                                             <  1:415902/274‑1 (MQ=255)                                                                                                                                                                      aaCACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCANCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTACGTCTCTACCGATGGTTCGATgg                                                                             <  1:507179/274‑1 (MQ=255)                                                                                                                                                                                        aTCGAGCAAAATATGACCGGCCTCGATAATCTCATGCATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTAAAAAAc                                                                                                                                                                                                      >  2:477774/1‑135 (MQ=255)                                                                                                                                                                                           ggcaacataatcagcaatatcctgtttatccatcgaaccatcggtagagacgaaggcaatGGt                                                                                                                                                                                                                                                                           >  2:557253‑M1/61‑63 (MQ=255)                                                                                                                                                                                            aGCAAAATATGACCGGCCTCGATAAGCTCATGCATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGCAGCCGTGCAGCAAGTACAAAACCAGc                                                                                                                                                                                                  <  1:477783/135‑1 (MQ=255)                                                                                                                                                                                              cAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCa                                                                                                                                                                                                                                                              >  2:507711/1‑73 (MQ=255)                                                                                                                                                                                                  atatGACCGGCCTCGATAAGCGCATGTATATGTCATCTCAGAGGAGTGTCACCGGTCTGGCATCTGTCACttt                                                                                                                                                                                                                                                          <  1:507720/73‑1 (MQ=255)                                                                                                                                                                                                           gCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGc                                                                                                       >  1:388859/1‑211 (MQ=255)                                                                                                                                                                                                               cGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCATGACGGTGCGTaaaa                                                                                                                                   >  1:557079/1‑179 (MQ=255)                                                                                                                                                                                                               agATAATCTCATGTATATGTCATCGAAGAGCAGTGGCACCGGTCAGGCATCTGTCAATTTAAGTTGTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTc                                                                                                   <  2:388852/210‑1 (MQ=255)                                                                                                                                                                                                                   aaTCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCgg                                                                                                                               <  2:557067/179‑1 (MQ=255)                                                                                                                                                                                                                          tGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCAc                                                                                                                                                                                                                                        >  2:492178/1‑67 (MQ=255)                                                                                                                                                                                                                          tGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACaaaa                                                                                                                                                                                                       >  2:154717/1‑100 (MQ=255)                                                                                                                                                                                                                          tGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCTTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATGGATAAACAGGATATTGCTGATTATGTTGCCAGTAATATTCAGGACCCGTTAAGc                        >  1:640696/1‑275 (MQ=255)                                                                                                                                                                                                                          tGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATgg                                                                                     >  2:458993/1‑214 (MQ=255)                                                                                                                                                                                                                              tatGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGAt                                                                                                                                                                                                                                    <  1:492187/67‑1 (MQ=255)                                                                                                                                                                                                                              tatGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAg                                                                                                                                                                                                   <  1:154718/100‑1 (MQ=255)                                                                                                                                                                                                                              tatGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCg                                                                                 <  1:459000/214‑1 (MQ=255)                                                                                                                                                                                                                                 gTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGCTACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATGGATAAACAAGATATTGCTGATTATGTTGCCAGTAATATTCATGACCCGTTAAGCCCCGtaa                 >  1:277666/1‑273 (MQ=255)                                                                                                                                                                                                                                 gTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGAt                                                                                                                           >  1:724046/1‑169 (MQ=255)                                                                                                                                                                                                                                   cATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTCCCGATGGTTCGATGGATAAACAGGATATTGCTGATTATGTTGcc                                                >  1:239382/1‑242 (MQ=255)                                                                                                                                                                                                                                     tctcAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCa                                                                                                                       <  2:724032/169‑1 (MQ=255)                                                                                                                                                                                                                                     tctcAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATGGATAAACAGGATATTGCTGATTATGTTGCCAGTAATATTCAGGACCCGTTAAACCGCGTGAATgg             >  1:330776/1‑275 (MQ=255)                                                                                                                                                                                                                                      ctcAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGc                                                                                                                                                                       >  1:118969/1‑120 (MQ=255)                                                                                                                                                                                                                                             aaGTGGCAGCGGTCAGGCATCTGTTACTTTAAGTTTTAAAACAGGCACCGCTCCGGAAGAAGCCGTGGAGCAAATACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGTGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATGGATAAACAGGATATTGCTGATTATGTTGCCAGTAATATTCAGGACCCGTTAAGCCGCGTGAATGGCGTCgggg     <  1:33548/274‑1 (MQ=255)                                                                                                                                                                                                                                                tGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTa                                                                                                                                                                                                                                                  >  2:219633/1‑35 (MQ=255)                                                                                                                                                                                                                                                tGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATGGATAAACAGGATATTGCTGATTATGTTGCCAGTAATATTCAGGACCCGTTAAGCCGCGTGAATGGCGTCGGGGaaa  >  1:344216/1‑273 (MQ=255)                                                                                                                                                                                                                                                tGGCACCGGTCAGGCAGCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGAAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATGGATAAACAGGATATTGCTGATTATGTTGCCAGTAATATTAAGGACCCGTTAAGCCGCGTGAATGGCGTCGGGGata  >  1:404197/1‑275 (MQ=255)                                                                                                                                                                                                                                                    aCCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGc                                                                                                                                                                                                                                              <  1:219635/35‑1 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                            TTCTTTATTGATCGCCCCATTTTTGCCTGGGTGCTGGCAATCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGCAAAATATGACCGGCCTCGATAATCTCATGTATATGTCATCTCAGAGCAGTGGCACCGGTCAGGCATCTGTCACTTTAAGTTTTAAAGCAGGCACCGATCCGGACGAAGCCGTGCAGCAAGTACAAAACCAGCTGCAATCAGCCATGCGAAAGTTACCGCAGGCGGTGCAAAATCAGGGCGTGACGGTGCGTAAAACCGGCGATACCAACATTCTGACCATTGCCTTCGTCTCTACCGATGGTTCGATGGATAAACAGGATATTGCTGATTATGTTGCCAGTAATATTCAGGACCCGTTAAGCCGCGTGAATGGCGTCGGGGATA  >  CP009273/2580963‑2581476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.