New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2619439 =	29 (0.720)	5 (0.130)	5/302	NT	15.3%	coding (966/1542 nt)	ppx	exopolyphosphatase
	?	CP009273	2619960 =	27 (0.690)					coding (1487/1542 nt)	ppx	exopolyphosphatase

AAGACGGGATAATTACCCCGGAACGTCTGGAAAAACTGGTAAAAGAAGTTTTACGTCACCGTAATTTCGCATCGCTGAGTTTACCGGGTCTTTCCGAAGAGCGGAAAACAGTCTTCGTTCCGGGACTGGCGATTTTATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATATTCTGCAAAACAGTGACTTGCCGGGTTTTAATCAGGAACAGCAGCTGATGATGGCGACACTGGTGCGCTATCAC  >  CP009273/2619171‑2619709                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                               aaGACGGGATAATGACCCCGGAACGTCTGGAAAAACTGGGAAAAGAAGTTTTACGTCACCGGAATTGCGCATCGCTGAGTTTACCGGGTCTTTCCGAAGAGCGGAAAACAGTCTTCNTTCCGGGACTGTCGATTTTATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAAc                                                                                                                                                                                                                                                                          <  1:662743/275‑1 (MQ=255)                       aCGTCTGGAAAAACTGGTAAAAGAAGTTTTACGTCACCGTAATTTCGCATCGCTGAGTTTACCGGGTCTTTCCGAAGAGCGGAAAACAGTCTTCGTTCCGGGACTGGCGATTTTATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGCTTCCGTCATCAGGATGTGCGTAGTCGCGCCGCCAGAAGACTCGCGAACCAGGATCCCATCGCCAGCGCAc                                                                                                                                                                                                                                                    >  2:687609/1‑275 (MQ=255)                                    atGGTAAAAAAATGTTCACGTCACATGAATTTTGCATCGCTGTTTTTACGGTGTATTTTCTCATGGCGGATATCAGGTTGCTGTCCGGGTCTGGCGATTTTCTGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACggg                                                                                                                                                                                                                                        <  2:349323/273‑1 (MQ=255)                                     tGGTCAAAGGATTTGTACGTCACCGTAATTTCGCGTCGCTGAGTTTACCGGGTCTTTCCGAAGAGCGGAAAACGGTCTTCGTTCCGGGACTGGCGATTTTATGCGGTGTGTGTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTg                                                                                                                                                                                                                                      <  2:612165/275‑1 (MQ=255)                                               tgTTTTACGTCACCGTATTTTCGCATCGCTTAGTTTACCGGGTCTTTCCGAAGAGCGGAAAACAGTCTTCGTTCCGGGACTGGCGATTTTATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCTCGACGGGTGCTGGATACCa                                                                                                                                                                                                                            <  1:601216/274‑1 (MQ=255)                                               agTTTTACGTCACCGTAATTTTGCATCGCTGAGTTTACCGGGTCTTTCCGAAGAGCGGAAAACAGTCTTCGTTCCGGGACTGGCGATTTTATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCa                                                                                                                                                                                                                            <  1:333208/275‑1 (MQ=255)                                               agTTTTACGTCACCGTAATTTCGCATCGCTGAGTTTACCGGGTCTTTCCGAAGAGCGGAAAACAGTCTTCGTTCCGGGACTGGCGATTTTATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCACCCa                                                                                                                                                                                                                                                                        >  1:226962/1‑231 (MQ=255)                                                                                                                        gcagccgttaattgatacgctgaatgaaatcgaacccattcgcgaaagtgcctgaataatgcgggccgacatttctcgtcggcccgcaaagtattaagcggcgatttctggtgtactttcttcttcaattttcaaccgccagccagccaCGc                                                                                                                                                                                                                                                                              >  1:465872‑M1/150‑152 (MQ=255)                                                                                                                              cTGGCGATTTTATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCg                                                                                                                                                                                                                                                                               <  2:643542/145‑1 (MQ=255)                                                                                                                                        tATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGc                                                                                                                                                                                                                                                                              >  2:612353/1‑136 (MQ=255)                                                                                                                                           tgggTGTGTTTGATGCTTTAGCCATCCGTGAACGTAGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCa                                                                                                                                 <  1:687623/272‑1 (MQ=255)                                                                                                                                            cGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAAc                                                                                                                                                                                                                                                                          <  1:612366/136‑1 (MQ=255)                                                                                                                                               tgtgtTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGGAGCGCCACTGCAAGGGGCCGCCATGCAGCAGGaag                                                                                                                            >  1:46704/1‑273 (MQ=255)                                                                                                                                                            ctttcgcgaaagtgcctgaataatgcgggccgacatttctcgtcggcccgcaaagtattaagcggcgatttctggtgtacttccttcttcaattttcaaccgccagccagccaCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACa                                                                                                                                                                                                         >  2:658315‑M1/114‑185 (MQ=255)                                                                                                                                                                  ctCCGTGACCTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACca                                                                                                         <  1:216161/274‑1 (MQ=255)                                                                                                                                                                                     gggccgggggagtACGGGAAGGCGGACTGTATGCAATGGCACGCCGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCAc                                                                                      <  2:46703/263‑1 (MQ=255)                                                                                                                                                                                                       cggcccgcaaagtattaagcggcgatttctggtgtactttcttcttcaattttcaaccgccagccagccaCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTa                                                                                                                                                                                                                         <  2:118117‑M1/56‑1 (MQ=255)                                                                                                                                                                                                       aaGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATATTCTGCa                                                                     <  1:45206/274‑1 (MQ=255)                                                                                                                                                                                                           ccgcaaagtattaagcggcgatttctggtgtactttcttcttcaattttcaaccgccagccagccaCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCa                                                                                                                                                                                                                     >  1:118118‑M1/67‑126 (MQ=255)                                                                                                                                                                                                                    tGAAATGGAATGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGgccgc                                                                                                                                          >  1:730553/1‑192 (MQ=255)                                                                                                                                                                                                                    tGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGa                                                                                                                                                                                                >  2:480296/1‑138 (MQ=255)                                                                                                                                                                                                                     attaagtggcgatttctggtgtactttcttcttcaattttcaaccgccagcagcctCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGa                                                                                                                                                                                                                                            <  2:436311‑M1/37‑1 (MQ=255)                                                                                                                                                                                                                        aTGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAg                                                                                                                                                                                            <  1:480305/138‑1 (MQ=255)                                                                                                                                                                                                                        aTGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCAtg                                                                                                                                      <  2:730539/192‑1 (MQ=255)                                                                                                                                                                                                                         agcggcgatttctggtgtactttcttcttcaattttcaaccgccagcagcctCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACggg                                                                                                                                                                                                                                        >  1:436318‑M1/53‑93 (MQ=255)                                                                                                                                                                                                                            aaGGACGTTTCCGTCATCAGGCTGGGCGAAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGcc                                                                                                                                                                                                                                               >  1:508793/1‑83 (MQ=255)                                                                                                                                                                                                                            aaGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACg                                                                                                                                                                                                                                          >  2:593579/1‑88 (MQ=255)                                                                                                                                                                                                                            aaGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACg                                                                                                                                                                                                                                          >  1:148491/1‑88 (MQ=255)                                                                                                                                                                                                                            aaGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGAGCATCCGCaa                                                                                                                                                                    >  1:672553/1‑158 (MQ=255)                                                                                                                                                                                                                                aCGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGAc                                                                                                                                                                                                                                           <  2:508784/83‑1 (MQ=255)                                                                                                                                                                                                                                aCGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTg                                                                                                                                                                                                                                      <  2:148490/88‑1 (MQ=255)                                                                                                                                                                                                                                aCGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTg                                                                                                                                                                                                                                      <  1:593592/88‑1 (MQ=255)                                                                                                                                                                                                                                aCGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTgg                                                                                                                                                                <  2:672539/158‑1 (MQ=255)                                                                                                                                                                                                                                aCGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATc                                                                                                              <  1:201646/208‑1 (MQ=255)                                                                                                                                                                                                                                                      cGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGGGCATCCGCAACTGGGGGCGCTACTGCGATGGGCCGCCACGCTGCATGAGGCTGGGATGAATATCCACCCCAGCgg                                                                                                   >  1:370376/1‑197 (MQ=255)                                                                                                                                                                                                                                                              cACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATg                                                                                                                               >  2:294357/1‑161 (MQ=255)                                                                                                                                                                                                                                                                  gCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGt                                                                                                                           <  1:294362/161‑1 (MQ=255)                                                                                                                                                                                                                                                                           cTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGGACAACAACCGGAGCCGGCGCATCCGTAACTGGAGGCGATACTTCGAGGGGCCGGCATGCTGCCTGAGGTTGGGGTGAATATCAACCACAGAGGTTTGCATCGAAACTCCGCTTTAATTCTTCCAAACAAGGACAAGACGGGTATTAAGTAAGAAGAGCAGCGGAGGATAGAAAGACAGGTGCGCtcaaag  >  2:319269/1‑268 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                               AAGACGGGATAATTACCCCGGAACGTCTGGAAAAACTGGTAAAAGAAGTTTTACGTCACCGTAATTTCGCATCGCTGAGTTTACCGGGTCTTTCCGAAGAGCGGAAAACAGTCTTCGTTCCGGGACTGGCGATTTTATGCGGTGTGTTTGATGCTTTAGCCATCCGTGAACTGCGCCTTTCTGACGGGGCGTTACGCGAAGGCGTACTGTATGAAATGGAAGGACGTTTCCGTCATCAGGATGTGCGTAGTCGCACCGCCAGCAGCCTCGCCAACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATATTCTGCAAAACAGTGACTTGCCGGGTTTTAATCAGGAACAGCAGCTGATGATGGCGACACTGGTGCGCTATCAC  >  CP009273/2619171‑2619709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.