New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2877132	54 (1.350)	4 (0.110)	3/294	NT	8.1%	coding (366/1509 nt)	casA	CRISP RNA (crRNA) containing Cascade antiviral complex protein
	?	CP009273	= 2877239	39 (1.020)					coding (259/1509 nt)	casA	CRISP RNA (crRNA) containing Cascade antiviral complex protein

AGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCA  >  CP009273/2876867‑2877398                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                           aggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTAccc                                                                                                                                                                                                                                                                     <  1:158439/273‑1 (MQ=255)   gtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCNCCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGAAAAATGCACAATTCGTCGCACCACTTAcccc                                                                                                                                                                                                                                                                    >  1:616389/1‑272 (MQ=255)                                         tttttGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTCAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGATTAACGCAATCGNAGTGCATCCACCACATAATGCTTCACGCTGCCCCGGTTGATTGACACATGCACAATTCGTCGCGCCCCTTACCCCAGCCAACa                                                                                                                                                                                                                                                            >  1:667610/1‑242 (MQ=255)                                                          aggtgataaCATTGAGTACCCCCCTTGCACGCAGACCTATCCCCCGTACTACCGTTGTTACAGGTGTTCCTCCACGTAACCCGCTGTTAAAACCACCACCAAAACCTGGTGCCAGATTCGCCTGTTTTAATAACGCAATCGCAATGCATCCACCACATAATGCGTCACCCTGCCCCGGTTGATTGACAAATGAACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTCGACACCTTTGGTCTGCATa                                                                                                                                                                                                          <  2:636312/267‑1 (MQ=255)                                                              gAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGCTTTACAAATGCACCATTCGTCGCCCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCtt                                                                                                                                                                                                                     >  1:416143/1‑260 (MQ=255)                                                                    aTTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACAACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAAAGCAATCGCAGTGCATCCACCACTTAATGCTTCACNCTGCCCCGGTTGATTGACAAATGAACAATTCGTCGCGCAGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGAAACCTTTGGTCTGCATAAATGGATGtt                                                                                                                                                                                                >  1:676631/1‑275 (MQ=255)                                                                                  ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTCCGTGATTAAg                                                                                                                                                                                   >  1:18182/1‑274 (MQ=255)                                                                                       cGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGACGCTTACCCCAGCCAACAG‑TTTTCCATTGGAGTCACATCATTTGCTTTGACACCt                                                                                                                                                                                                                      >  1:396991/1‑233 (MQ=255)                                                                                            tccgaacCAACGTACGAACATTGTTACAGGTGTTCCTCCACGTCAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACatat                                                                                                                                                                        <  2:18182/273‑1 (MQ=255)                                                                                                              agaagagaccggTTTTCCTCCACCTAAACCGCTTTTAAAACCACCCCCCAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGAt                                                                                                                                                        <  2:719569/263‑1 (MQ=255)                                                                                                               gttgttACAGTTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCAGTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAgg                                                                                                                                                                                  >  1:723761/1‑246 (MQ=255)                                                                                                               gttgttACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAgg                                                                                                                                                                                  <  2:723747/246‑1 (MQ=255)                                                                                                                           gtTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACTCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAtt                                                                                                                                                                                      >  1:587291/1‑230 (MQ=255)                                                                                                                            ttCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACCGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATCAAGGGATGTTCTGCGTGATTAAGGTAGAACATACATATCAACGGCGCGATGAGTTGTTGAAACTc                                                                                                                                         >  1:11425/1‑274 (MQ=255)                                                                                                                               ctccACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAgg                                                                                                                                                                                  <  2:587278/230‑1 (MQ=255)                                                                                                                                    cGTAAACCGCGTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCAcggcg                                                                                                                                                            <  1:719583‑M2/247‑6 (MQ=255)                                                                                                                                     gTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGTATCCATCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAgg                                                                                                                                                                                  <  1:648590/224‑1 (MQ=255)                                                                                                                                       taccatctatcaaaaCCCCCCCCCACGCCCGGTGCCTGAGTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACTACCTAATGCTTCTCCCTGCCCCGGTTGATTGACAAGTGCACAATGCGTCGCGCCTCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAg                                                                                                                             <  2:11425/264‑1 (MQ=255)                                                                                                                                                  aaaaCCACCANCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGAt                                                                                                                                                                                                   <  1:580580/194‑1 (MQ=255)                                                                                                                                                        accaccaAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCtt                                                                                                                                                                                                                     >  2:167447/1‑170 (MQ=255)                                                                                                                                                            ccaAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGt                                                                                                                                                                                                                 <  1:167449/170‑1 (MQ=255)                                                                                                                                                                 aCCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactg                                                                                                                                                                               >  2:605017‑M1/1‑106 (MQ=255)                                                                                                                                                                     ggTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactgttgg                                                                                                                                                                           <  1:605030‑M1/199‑98 (MQ=255)                                                                                                                                                                      gTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactg                                                                                                                                                                               >  2:211029‑M1/1‑101 (MQ=255)                                                                                                                                                                          cTGATTCGCCTGGTTGAATAACGCNATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGc                                                                                                                                                                                            <  1:614196/177‑1 (MQ=255)                                                                                                                                                                          cTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactgttgg                                                                                                                                                                           <  1:211031‑M1/194‑98 (MQ=255)                                                                                                                                                                                 gCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGt                                                                                                                                                                                                                                                          >  1:684421/1‑108 (MQ=255)                                                                                                                                                                                     ggTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGttttt                                                                                                                                                                                                                                                      <  2:684407/108‑1 (MQ=255)                                                                                                                                                                                            tAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGtt                                                                                                                                                                                                >  1:132021/1‑155 (MQ=255)                                                                                                                                                                                            tAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCttt                                                                                      >  1:312102/1‑261 (MQ=255)                                                                                                                                                                                                gCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGc                                                                                                                                                                                            <  2:132020/155‑1 (MQ=255)                                                                                                                                                                                                acagccGCAGTGCACCCTCCACATAATGCTTCACCCTTCCCCGGTTTATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTGTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGcc                                                                                  <  2:312097/256‑1 (MQ=255)                                                                                                                                                                                                 cAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCtt                                                                                                                                                                                                                     >  1:647149/1‑129 (MQ=255)                                                                                                                                                                                                    tCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGATCGGATTCATTATGCGATGTCGAAATTCAACGTCATCtt                                                                                       >  2:96672/1‑252 (MQ=255)                                                                                                                                                                                                    tCGCAGTGCACCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACa                                                                                                                                                                                                                                                            >  1:735926/1‑87 (MQ=255)                                                                                                                                                                                                    tCGCAGAGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTAGTCGCGACGCTTACACCACCCAACAGTTTTTCCATAGGAGGCACATATTTTTCTTTGACACCTTTGATCTGCCTAAAGGGATGTTCTgag                                                                                                                                                                                           >  2:311324/1‑150 (MQ=255)                                                                                                                                                                                                     cGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGt                                                                                                                                                                                                                 <  2:647135/129‑1 (MQ=255)                                                                                                                                                                                                        aGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGttt                                                                                                                                                                                                                                                        <  2:735912/87‑1 (MQ=255)                                                                                                                                                                                                        aGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAt                                                                                                                                                                                       <  1:311329/152‑1 (MQ=255)                                                                                                                                                                                                        aGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGc                                                                                   <  1:96673/252‑1 (MQ=255)                                                                                                                                                                                                                  ccacATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTgg                                                                                                                                                                                                                  >  1:228157/1‑115 (MQ=255)                                                                                                                                                                                                                      aTAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTg                                                                                                                                                                                                              <  2:228155/115‑1 (MQ=255)                                                                                                                                                                                                                               cACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCg                                                                                                                                                                                           >  2:436547/1‑125 (MQ=255)                                                                                                                                                                                                                                   cTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAt                                                                                                                                                                                       <  1:436554/125‑1 (MQ=255)                                                                                                                                                                                                                                    tGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACa                                                                                                                                                                                                                                                            >  1:724389/1‑55 (MQ=255)                                                                                                                                                                                                                                     gCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTc                                >  1:425401/1‑274 (MQ=255)                                                                                                                                                                                                                                      ccccGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCg                                                                                                                                                                                           >  1:87846/1‑118 (MQ=255)                                                                                                                                                                                                                                        ccGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGttt                                                                                                                                                                                                                                                        <  2:724375/55‑1 (MQ=255)                                                                                                                                                                                                                                          ggTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAt                                                                                                                                                                                       <  2:87845/118‑1 (MQ=255)                                                                                                                                                                                                                                           gTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACa                                                                                                                                                                                                                                                            >  1:522678/1‑48 (MQ=255)                                                                                                                                                                                                                                           gTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAAtt                                                                      >  2:660359/1‑230 (MQ=255)                                                                                                                                                                                                                                               attgaCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGttt                                                                                                                                                                                                                                                        <  2:522669/48‑1 (MQ=255)                                                                                                                                                                                                                                               attgaCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTCGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGcc                                                                  <  1:660373/230‑1 (MQ=255)                                                                                                                                                                                                                                                   aCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCNTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAAt                                                              >  1:681348/1‑230 (MQ=255)                                                                                                                                                                                                                                                                tcgtcgCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCNCGATGAGTTGTTAAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGc    <  1:625030/275‑1 (MQ=255)                                                                                                                                                                                                                                                                  gtcgCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATNTTCTGCGTNATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCa  <  1:490535/275‑1 (MQ=255)                                                                                                                                                                                                                                                                  gtcgCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAtt                                                                                                                                                                                      >  2:115878/1‑95 (MQ=255)                                                                                                                                                                                                                                                                  gtcgCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCttt                                                                                      >  1:129230/1‑191 (MQ=255)                                                                                                                                                                                                                                                                    cgcgCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCg                                                                                                                                                                                           >  1:244841/1‑88 (MQ=255)                                                                                                                                                                                                                                                                      cgccgcTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAgg                                                                                                                                                                                  <  1:115879/95‑1 (MQ=255)                                                                                                                                                                                                                                                                      cgccgcTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGcc                                                                                  <  2:129229/191‑1 (MQ=255)                                                                                                                                                                                                                                                                      cgcCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactgttggctggggtaagcggcgcgacgaattgtgcatttgtcaatcaaccggggcagggtgaagcattatgtggtggatgcactgcgattgcgttattcaaccaggcgaatcaggcaccaggttttggtggtggttttaaacgcggtttacg                          <  1:719583‑M1/247‑243 (MQ=255)                                                                                                                                                                                                                                                                        ccgcTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAt                                                                                                                                                                                       <  2:244838/88‑1 (MQ=255)                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                           AGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCA  >  CP009273/2876867‑2877398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.