New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3141613 =	36 (0.900)	4 (0.110)	4/294	NT	9.7%	coding (358/1041 nt)	gpr	L‑glyceraldehyde 3‑phosphate reductase
	?	CP009273	3141796 =	40 (1.050)					coding (541/1041 nt)	gpr	L‑glyceraldehyde 3‑phosphate reductase

AATTTCGGTCACGTTAACGCGCTGGAATCACAGCGTGCGATCCTGCGTAAAGCGTTTGATTTGGGCATTACGCACTTTGATTTAGCCAACAATTACGGGCCGCCTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCAGAGCGGACGCAAAAAATGGTCGAGTTGCTGCGCGAGTGGAAAATTCCGCTGTTAATTCATCAACCTTCGTACAATTTACTGAACCGCTGGGTGGATAAAAGCGGC  >  CP009273/3141358‑3141876                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                        aaTTTCGGTCACGTTAACGCGCTGGAATCACAGCGTGCGATCCTGCGTAAAGCGTTTGATTTGGGCATTACGCACTTTGATTTAGCCAACAATTACGGGCCGCCTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGCTTATCACTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCACTGGCGGCGCACGGAAATACCTGATCGCCCGCCTCGACCCAANCCTGAACCg                                                                                                                                                                                                                                                      >  2:284319/1‑275 (MQ=255)       ggTCACGTTAACGCGCTGGAATCACAGCGTGCGATCCTGCGTAAAGCGTTTGATTTGGGCATTACGCACTTTGATTTAGCCAACAATTACGGGCCGCCTCCAGGCAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCCCGACCaaa                                                                                                                                                                                                                                                                >  1:400239/1‑259 (MQ=255)                       tGGAATCACAGCGTGCGATCCTGCGTAAAGCGTTTGATTTGGGCATTACGCACTTTGATTTAGCCAACAATTACGGGCCGCCTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGat                                                                                                                                                                                                                                <  1:284324/275‑1 (MQ=255)                                          tcttcGTAAAGCGTTTGATTTGGGCATTACGCACTTTGATTTAGCCAACAATTACGGGCCGCCTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCCCTGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATcgcg                                                                                                                                                                                                             <  1:583562/271‑1 (MQ=255)                                                        ttGATTTGGGCATTACGCACTTTGATTTAGCCAACAATTACGGGCCGCCTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAACCCGAAGCGTATGGGGCTTGAGGATGTCGATAACTTGTACTCCAATCGCGTGGAGGAAAAAAc                                                                                                                                                                                                >  2:87022/1‑274 (MQ=255)                                                                                                     cgccTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTAt                                                                                                                                                                                                                                                   >  2:82027/1‑178 (MQ=255)                                                                                                     cgccTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCACTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCCGAAGCGTATGGGGCTTGAGTATGTCGatca                                                                                                                                                                                                                              >  2:733655/1‑197 (MQ=255)                                                                                                        cTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGNGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATAAGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGt                                                                                                                                               >  1:539512/1‑275 (MQ=255)                                                                                                         tCCTGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATAGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCttt                                                                                                                                                                                                                          <  1:733669/199‑1 (MQ=255)                                                                                                         tCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTa                                                                                                                                              <  1:48421/275‑1 (MQ=255)                                                                                                                 gcgcAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCAt                                                                                                                                                                                                                 >  1:260079/1‑200 (MQ=255)                                                                                                                     agaagaGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATcgcg                                                                                                                                                                                                             <  2:260076/200‑1 (MQ=255)                                                                                                                               tttGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGcc                                                                                                                                                                                                                                                             >  1:366343/1‑142 (MQ=255)                                                                                                                                   gTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGaa                                                                                                                                                                                                                                                         <  2:366336/142‑1 (MQ=255)                                                                                                                                           ctgcGTGAGGATTTTGCCGCTTAGCGCGATTCACTGTTTATCTCTACAAAGGCGGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCAAGTAAATCCCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGc                                                                                                             <  1:386348/274‑1 (MQ=255)                                                                                                                                                                  gggtatccagcaggccgcttttatccacccagcggttcagtaaattgtacgaaggttgatgaattaacagcggaattttccactcgcgcagcaaCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGatat                                                                                                                                                                                                                              <  2:329802‑M1/44‑1 (MQ=255)                                                                                                                                                                      atccagcaggccgcttttatccacccagcggttcagtaaattgtacgaaggttgatgaattaacagcggaattttccactcgcgcagcaaCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCttt                                                                                                                                                                                                                          >  1:329808‑M1/91‑138 (MQ=255)                                                                                                                                                                             aggccgcttttatccacccagcggttcagtaaattgtacgaaggttgatgaattaacagcggaattttccactcgcgcagcaaCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCag                                                                                                          <  2:607133‑M1/160‑1 (MQ=255)                                                                                                                                                                                 cgcttttatccacccagcggttcagtaaattgtacgaaggttgatgaattaacagcggaattttccactcgcgcagcaaCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCAGAGCg                                                                                                      >  1:607146‑M1/80‑243 (MQ=255)                                                                                                                                                                                       tACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGgaag                                                                                                                                                                                     >  2:561836/1‑158 (MQ=255)                                                                                                                                                                                           aaGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAAc                                                                                                                                                                                 <  1:561848/158‑1 (MQ=255)                                                                                                                                                                                                 ggctACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACAAAAGCCTGAAg                                                                                                                                                                                                                                                        >  2:18169/1‑81 (MQ=255)                                                                                                                                                                                                     aCGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCTTa                                                                                                                                                                                                                                                    <  1:18169/81‑1 (MQ=255)                                                                                                                                                                                                         tatGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGt                                                                                                                                                                                                                                    >  1:432645/1‑93 (MQ=255)                                                                                                                                                                                                         aatGTGGCCCGAAAATTACGGCTCTGGCGGTTCACTTTAATACCTGCTCGCCAGCCTCGACCAATGCTTGATGCGTATGGGGCTTGAGTAGGTCGATATCTTTTTCTCTCATCGCGTCGATGAAAATACGCCGATGGAATAAACCGCCTCTGCGCTGGCGCATGCGGTACAAAGCGGTAAGGCGCTGTAGGTCGGGATCTCCTCTTACTCGCTAGAGCGGACGCAAACAATGGTCGAGTTGCTGCGCGAGTGGAAAATTCCGCTGTTAATtcatc                                              <  2:615299/274‑1 (MQ=255)                                                                                                                                                                                                             tgGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGat                                                                                                                                                                                                                                <  2:432638/93‑1 (MQ=255)                                                                                                                                                                                                                   ggcccTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGAt                                                                                                                                                                                          >  2:429872/1‑125 (MQ=255)                                                                                                                                                                                                                   ggcccTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCAGAGCGGACGCAAAAAATGGTCGAGTtgct                                                                              >  2:229107/1‑233 (MQ=255)                                                                                                                                                                                                                     cccTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGt                                                                                                                                                                                                                                    >  1:57399/1‑81 (MQ=255)                                                                                                                                                                                                                       cTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGgaa                                                                                                                                                                                      <  1:429879/125‑1 (MQ=255)                                                                                                                                                                                                                       cTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCAGAGCGGACGCAAAAAATGGTCGAGTTGCTgcgc                                                                          <  1:229109/233‑1 (MQ=255)                                                                                                                                                                                                                         tACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGat                                                                                                                                                                                                                                <  2:57398/81‑1 (MQ=255)                                                                                                                                                                                                                               tctGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGc                                                                                                                                                  >  1:685541/1‑153 (MQ=255)                                                                                                                                                                                                                                 tGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCtt                                                                                                                                                                                                                                            >  2:617180/1‑61 (MQ=255)                                                                                                                                                                                                                                 tGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGAGATCTCCTCTTACTCCCCAGAGCGGACGCAAAAAATGGTCGAGTTGCTGCGCGAGTGGAAAATTCCGCTGTTAATTCATCAACCTTCGTACAATTTACTGAAcc                      >  1:461980/1‑275 (MQ=255)                                                                                                                                                                                                                                   gCGGTTCACGTAAAAACCTGCTCGCCAGCCTCGACCAAAGACTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTa                                                                                                                                              <  2:685527/153‑1 (MQ=255)                                                                                                                                                                                                                                     ggTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGt                                                                                                                                                                                                                                        <  1:617193/61‑1 (MQ=255)                                                                                                                                                                                                                                                      gCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCAGAGCGGACGCAAAAAATGGTCGAGTTGCTGCGCGAGTGGAAAATTCCGCTGTTAATTCATCAACCTTCGTACAATTTACTGAAc                       >  2:124137/1‑253 (MQ=255)                                                                                                                                                                                                                                                      gCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCAGAGCGGACGCAAAAAATGGTCGAGTTGCTGCGCGAGTGGAAAATTCCGCTGTTAATTCATCAACCTTCGTACAATTTACTGAACCGCTGGGTGGCTAAAAGCGGc  >  1:361498/1‑274 (MQ=255)                                                                                                                                                                                                                                                          gCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCAGAGCGGACGCAAAAAATGGTCGAGTTGCTGCGCGAGTGGAAAATTCCGCTGTTAATTCATCAACCTTCGTACAATTTACTGAACCGCt                   <  1:124138/253‑1 (MQ=255)                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                        AATTTCGGTCACGTTAACGCGCTGGAATCACAGCGTGCGATCCTGCGTAAAGCGTTTGATTTGGGCATTACGCACTTTGATTTAGCCAACAATTACGGGCCGCCTCCAGGAAGCGCAGAAGAGAACTTTGGTCGCCTGCTGCGGGAGGATTTTGCCGCTTATCGCGATGAACTGATTATCTCTACCAAGGCTGGCTACGATATGTGGCCCGGCCCTTACGGCTCTGGCGGTTCACGTAAATACCTGCTCGCCAGCCTCGACCAAAGCCTGAAGCGTATGGGGCTTGAGTATGTCGATATCTTTTACTCTCATCGCGTCGATGAAAATACGCCGATGGAAGAAACCGCCTCTGCGCTGGCTCATGCGGTACAAAGCGGTAAGGCGCTGTATGTCGGGATCTCCTCTTACTCGCCAGAGCGGACGCAAAAAATGGTCGAGTTGCTGCGCGAGTGGAAAATTCCGCTGTTAATTCATCAACCTTCGTACAATTTACTGAACCGCTGGGTGGATAAAAGCGGC  >  CP009273/3141358‑3141876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.