New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 3209876 = | 42 (1.050) | 5 (0.140) | 4/286 | NT | 11.8% | intergenic (‑26/‑262) | yqjH/yqjI | putative siderophore interacting protein/PadR family putative transcriptional regulator |
? | CP009273 | 3210116 = | 36 (0.970) | intergenic (‑266/‑22) | yqjH/yqjI | putative siderophore interacting protein/PadR family putative transcriptional regulator |
GCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGCGTCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGG > CP009273/3209605‑3210132 | gCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGCGTCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGa < 1:329434/274‑1 (MQ=255) tggctgtcatcgcgcgagagaatatccagaatcaccagacgtaattcaccgtgaccaaagaaacgttgccgacgaccgccgccgcgaccgtggcgaccaccgcagcattgaccgtgttcatgctggtgaccgtgtccgcagtgctcgtgttctgacttctcacctttgcagcagccctcatggcgtggctggccttcatgtttacaacacccttcgtgatgatggctcatatcagcctccttttgcttaattAGata < 1:465604‑M1/5‑1 (MQ=255) gATGCCCTCTTCCGTTACCGTTGGCGGCAAAAAGTGAGCGTCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCa < 1:88481/274‑1 (MQ=255) aaaaagagacaggccGTTGGCGGAACAAAGTGGGCGTCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAaat < 2:590101/260‑1 (MQ=255) cacaAAGTGAGCGTCAGGTAGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGc > 1:590114/1‑246 (MQ=255) aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGata < 1:438731/274‑1 (MQ=255) aTCGTCAAAGCCACGCGATGTAAAACCGTGCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACACGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATc < 1:721439/225‑1 (MQ=255) cgcgATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGt > 1:258179/1‑234 (MQ=255) aTGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGaa < 2:258176/234‑1 (MQ=255) tCCAGCGGCTCGCCGCCGAGGACAATGCGCTGAAAACAGGCGTTGATGAGCACAACGCGTAACACAGTCGGTTCACGGACGCGCAGATCATTGCGGACGCGCGGAGGGCAGCGGGGGGTGTTATTCATTGCTATCGCCATCGTGATGGTAATCAGat > 2:627409/1‑157 (MQ=255) tCCAGCGCCTCGCCGGCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATNATGATTGt > 1:499167/1‑192 (MQ=255) gcggCTCGCCGCCGAGGACAATGCGCTGAAAACCGTCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAAt < 2:499158/192‑1 (MQ=255) gcgcNTCGCCTCCGAGGTCAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGGTCACGGAAGCGCAGAGCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGatatat < 1:627423/157‑1 (MQ=255) tGCGCTGAAAACCGGCGCTGAGGCGCTCTACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCNAGCGATTTGTAGAACt > 1:523252/1‑200 (MQ=255) aaCACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGc > 1:42981/1‑241 (MQ=255) gtcagtTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTc > 2:179771/1‑108 (MQ=255) tgcagcagccctcatggcgtggctggccttcatgtttacaacacccttcgtgatgatggctcatatcagcctccttttgcttaattAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTATGAGATGAGTCCACGTTaaaaaa < 1:354092‑M1/188‑1 (MQ=255) gtTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCaa < 1:179773/108‑1 (MQ=255) cACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACt > 1:49931/1‑100 (MQ=255) gccctcatggcgtggctggccttcatgtttacaacacccttcgtgatgatggctcatatcagcctccttttgcttaattAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCa < 1:589501‑M1/56‑1 (MQ=255) cGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGa > 2:289515/1‑139 (MQ=255) gAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCa < 2:49930/100‑1 (MQ=255) ctcatggcgtggctggccttcatgtttacaacacccttcgtgatgatggctcatatcagcctccttttgcttaattAGata < 1:169639‑M1/5‑1 (MQ=255) tcatggcgtggctggccttcatgtttacaacacccttcgtgatgatggctcatatcagcctccttttgcttaattAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCg > 2:589488‑M1/76‑135 (MQ=255) aGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTg < 1:289520/139‑1 (MQ=255) tggcgtggctggccttcatgtttacaacacccttcgtgatgatggctcatatcagcctccttttgcttaattAGATATATc > 2:169637‑M1/73‑81 (MQ=255) cgcAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAaatgata > 1:376679/1‑103 (MQ=255) cgcAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGt > 2:529926/1‑111 (MQ=255) gATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAaatgataatga < 2:376672/103‑1 (MQ=255) gATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAAt < 1:529935/111‑1 (MQ=255) tGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCAGTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAAACGAACCGCCTATTCTCAGGCATCATTACTCAACGCAGGAAGCGGCGTGAAAGCCGTAAACGGCATACGTGTGAGACGAGTCAACGTCTAAAAATCATATTTACTCTTgacataatttg > 2:636174/1‑265 (MQ=255) tGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCAAGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGat < 1:409307/274‑1 (MQ=255) caacacccttcgtgatgatggctcatatcagcctccttttgcttaattAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCa < 1:83379‑M1/56‑1 (MQ=255) gTAGGGGAGAGTGCTATTCATTGTTATCGCCTTCGTTATTGTAATAAGATATATCTAAATAAATCTCCCATATGATAATGATTGTTAATCATAATAAATGCAAGCGTTTTGTTGAACGGATAGGTCTATAGTCTTTGATGACTAACAGCCTCTTCTCTGGCATCAATACTCGACGCCGGATGCGGCGTGAATTCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAATTCATTTTTACACTTGCAAGAACGCTCATATCAGATATgaa < 2:651473/274‑1 (MQ=255) acccttcgtgatgatggctcatatcagcctccttttgcttaattAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCg > 2:83378‑M1/45‑104 (MQ=255) gCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAAcc > 1:559729/1‑144 (MQ=255) ggggTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCct < 2:559717/144‑1 (MQ=255) ggTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACt > 2:684870/1‑57 (MQ=255) atgatggctcatatcagcctccttttgcttaattAGa > 2:245304‑M1/35‑37 (MQ=255) ttATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCtaaa > 1:687059/1‑46 (MQ=255) ttATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCa < 1:684884/57‑1 (MQ=255) tATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATg > 1:62682/1‑110 (MQ=255) tCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCtaaataaa < 2:687045/46‑1 (MQ=255) cATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCta < 2:62681/110‑1 (MQ=255) tGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCaaa > 2:248255/1‑51 (MQ=255) tGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCATGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGAAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCaa > 1:190639/1‑275 (MQ=255) tGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACAGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATAATTTTTAAACTTGAAAGAACGCTCATATCACAAATAAATTAGATATTTCAAAtttataaa > 2:16505/1‑269 (MQ=255) aTCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAaatgat < 1:248258/51‑1 (MQ=255) tCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGc > 2:570906/1‑224 (MQ=255) gCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTNTAGAACTGNTATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTCGATATATCTAATTAAGCAAAaggagg < 1:475135/275‑1 (MQ=255) cTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGa < 1:570919/224‑1 (MQ=255) cGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCa > 1:694845/1‑69 (MQ=255) aTGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCg < 2:694831/69‑1 (MQ=255) | GCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGCGTCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTCAACGCGTAACACAGTCAGTTCACGGAAGCGCAGATCATTGCGAACGCGCTGCGGGTAGCGGGGGGTGTTATTCATTGTTATCGCCTTCGTGATGGTAATCAGATATATCTAAATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGG > CP009273/3209605‑3210132 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |