New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3614229 =	8 (0.200)	6 (0.160)	5/288	NT	14.2%	coding (1678/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
	?	CP009273	3757360 =	65 (1.740)					coding (1818/4134 nt)	rhsA	Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor

CACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCCACACAGTGACTTACCCTGCGCAACGGAAGATGCCACCGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCT  >  CP009273/3613962‑3614488                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                    gttgcaagccctccatcctggctggggataaggttgcgggtcaggtcggggtgataacgctggttgcggccggcaaagccggtttcctgtatcagccgggtaagtacatcgtaacggaaggtggtttggctgccgttttcactggtcaggcggatgacccgtccggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtccggggcaATGAcggc                                                                                                                                                                                                                                                              >  2:99088‑M1/268‑275 (MQ=255)  tgaccagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtccggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtccggggcaATGAcggcg                                                                                                                                                                                                                                                             <  1:172041‑M1/9‑1 (MQ=255)        gaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtccggccgcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcaacgtacgttgtcccgttcctgctggcgttcggggcacgcacggcgggctgg                                                                                                                                                                                                                                                       <  2:141804‑M1/15‑6 (MQ=255)              catcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtccggcagcatcgtcttccatactgctcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtttcccttttcttctgccgtccgggccaCTGacggcggtgagatacac                                                                                                                                                                                                                                                  <  1:235172‑M1/20‑9 (MQ=255)                     tctgcggttaagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtccggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtccggggcaATGACGGCGGTGCACCGCGAGGAAGGGc                                                                                                                                                                                                                                          >  1:127383‑M1/248‑275 (MQ=255)                     gctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtccggcagcatcgtattccatactgcgcgttagcccgacctgcgtggtacggacggcctttccccccgcaccgtactgtgtcccgtttctgctgccggcgggggcaCTGCCGGCGGTGCCCCGCGtggacgg                                                                                                                                                                                                                                            <  2:127382‑M1/26‑4 (MQ=255)                                                                                                                                                                                                                   aGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCGTACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGAACAAGTACGATGCGGGGGGAAAGGCCATCCTTACCACGAAnagcgggcgaaa                                            >  2:68021/1‑271 (MQ=1)                                                                                                                                                                                                                      tccACCGCCCGGTCCGGTTATGCACCCCGGTAGGACCAGGACGGCGTCGGGCAGATGCGGGCGGGGCCCGGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGAcgcg                                         <  2:14611/273‑1 (MQ=11)                                                                                                                                                                                                                             aCTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGGACCACGCAGGGCGGGCTGACGCGCAGGATg                                  >  1:14611/1‑275 (MQ=14)                                                                                                                                                                                                                              cTGTTCCGGTGATGGCACCCGTTATGCCCAGGACCCAGTCGGTCAGTGGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGCCCCGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGGCGCGGAAGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGCAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATg                                  <  2:259681/274‑1 (MQ=11)                                                                                                                                                                                                                                    cgcatcgtactgtgtcccgtttctgctgccgtccggggcaATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGaca                                                                                                                                                                                    <  2:352356‑M1/82‑1 (MQ=255)                                                                                                                                                                                                                                    cgcatcgtactgtgtcccgtttctgctgccgtccggggcaATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATc                                                                                                                                                 <  2:21110‑M1/117‑1 (MQ=255)                                                                                                                                                                                                                                        tcgtactgtgtcccgtttctgctgccgtccggggcaATGa                                                                                                                                                                                                                                                                  >  1:292152‑M1/37‑40 (MQ=255)                                                                                                                                                                                                                                        tcgtactgtgtcccgtttctgctgccgtccggggcaATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCa                                                                                                                                                                                >  1:352362‑M1/37‑122 (MQ=255)                                                                                                                                                                                                                                        tcgtactgtgtcccgtttctgctgccgtccggggcaATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCg                                                                                                                                             >  1:21111‑M1/37‑157 (MQ=255)                                                                                                                                                                                                                                                tgtcccgtttctgctgccgtccggggcaATGAcgg                                                                                                                                                                                                                                                               <  1:33697‑M1/7‑1 (MQ=255)                                                                                                                                                                                                                                                          catgaccGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGa                                             >  2:79605/1‑235 (MQ=2)                                                                                                                                                                                                                                                             gaccGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCCGACGGGCAGGGGGGAATACGAAGCTGCCGGACggggtctgcggcg  >  2:728921/1‑265 (MQ=11)                                                                                                                                                                                                                                                             gaccGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGAGTGGGGAAAGGCCGTCCGGACCACGCCGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGACGGACGGGGCATCCGCCt  >  1:85704/1‑275 (MQ=9)                                                                                                                                                                                                                                                                   ttCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAAt                              >  1:467737/1‑241 (MQ=31)                                                                                                                                                                                                                                                                       ggCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGa                          <  2:467730/241‑1 (MQ=31)                                                                                                                                                                                                                                                                            ATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAAcg                                                                                                                                                                   <  1:215473‑M1/99‑1 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                    CACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCCACACAGTGACTTACCCTGCGCAACGGAAGATGCCACCGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCT  >  CP009273/3613962‑3614488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.