New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	311145 =	NA (NA)	4 (0.100)	4/298	NT	NA	coding (144/300 nt)	insE1	IS3 transposase A
	?	CP009273	311230 =	NA (NA)					coding (229/300 nt)	insE1	IS3 transposase A

TGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATT  >  CP009273/310874‑311211                                                                                                                                                                                                                                                                                |                                                                   tGGTAAAGATAAGCGTCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATAAGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTg                                                                  <  1:115353/274‑1 (MQ=255)                                       tataagagacatccTATACGCCATTGCCGCGTACCCAGAAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGGAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTTAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGGACTCAGCCTGTATGAATCACAACTCTACAACTTGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAAc                            <  1:76300/262‑1 (MQ=11)                                                                 ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTTAAGCTTGCTGCCCGCATCGGTGNTACTGCCGCAGCCCGTGAACTCAGCCTGTCTGAATCACAACTCTACAACTGGCGCAGTAACCAGCAAAATCAACAGACGTCTTCTGAACGTGAACTGAAGATGCCAACAGAGAtt  >  1:685146/1‑274 (MQ=11)                                                                                                                                                                                                                                                                                |                                                                   TGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATT  >  CP009273/310874‑311211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.