New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	501973 =	37 (0.920)	4 (0.100)	3/298	NT	10.1%	coding (1604/1653 nt)	ushA	bifunctional UDP‑sugar hydrolase/5'‑nucleotidase
	?	CP009273	502307 =	36 (0.930)					coding (232/480 nt)	ybaK	Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase

ATTACCTGACCGCCGTCGCGCAGATGAAGCCAGATTCAGGTGCCTACCCGCAATTTGCCAACGTTAGCTTTGTGGCGAAAGACGGCAAACTGAACGACCTTAAAATCAAAGGCGAACCGGTCGATCCGGCGAAAACTTACCGTATGGCGACATTAAACTTCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTGCCGCCAGTTCGATATCCAGTCCGCGCTTGCCGCCGGAAACATAAATAGTGGCAAATTCTTGTGCGGGGGCGTCGATAATCGTTGGCAGACGTTTTTTCTGCCCCAGTGGGCTA  >  CP009273/501703‑502230                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                  attACCTGACAGCCGTAGCGAAGATGAAGCCAGAGTCAGGTGCCTACCCGCAATTTGCCAACGTTAGCTTGGTGGCGAAAGACGGCAAACTGAACGACCTTAAAATCAAAGGCGAACCGGTCGATCCGGCGAAAACTTACCGTATGGCGACATTAAACTTCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCt                                                                                                                                                                                                                                                                <  1:266897/274‑1 (MQ=255)         aCCGCCGTCGCGCAGATGAAGCCAGATTCAGGTGCCTACCCGCAATTTGCCAACGTTAGCTTTGTGGCGAAAGACGGCAAACTGAACGACCTTAAAATCAAAGGCGAACCGGTCGATCCGGCGAAAACTTACCGTATGGCGACATTAAACTTCAATGCAACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTAGCCGCTGGATGTGAg                                                                                                                                                                                                                                                       >  1:581594/1‑275 (MQ=255)                                             tACCCGCAATTTGCCAACGTTAGCTTTGTGGCGAAAGACGGCAAACTGAACGACCTTAAAATCAAAGGCGAACCGGTCGATCCGGCGAAAACTTACCGTATGGCGACATTAAACTTCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTNTTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTa                                                                                                                                                                                                                   >  1:529242/1‑275 (MQ=255)                                                                aaaaaaacaagatttcgtttcaaatccatacctacgagcacgatccggctgaaaccaattttggcgatgaagtcgtcaaaaaattaggtttgaatccggatcaggtctacaaaacgctgctggtggcagtgaacggtgatatgaaacaccttgccgtggccgttacgccggtcgcaggtcaactggatcttaaaaaagtagcaaaagCGCt                                                                                                                                                                                                                                                                >  1:36956‑M1/208‑211 (MQ=255)                                                                        gtgGCGAAAGACGGCAACCTGAACGACCTTAAAATCAAAGGCGAACCGGTCGAGCCGGCGAAAACTTACCGTATGGCGACATTAAACTTCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATc                                                                                                                                                                                         <  1:109435/274‑1 (MQ=255)                                                                        gtgGCGAAAGAAGGCAAAAGGAACGACCGTAAAAGAAAAGGCGAACCGGTCGAGCCGGCGAAAACTTACCGGAGGGCGACATTAAACTTCAATGCCTCCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGATATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATc                                                                                                                                                                                         <  1:382577/274‑1 (MQ=255)                                                                               aaGACGGCAAACTGAACGACCTTAAAATCAAAGGCGAACCTGTCGATCCGGCGAAAACTTACAGTATGGCGAAATTAAACTGCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAGCCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCCGATGTTTGCATCCGGcaca                                                                                                                                                                                  <  1:595070/274‑1 (MQ=255)                                                                                                  cgagcacgatccggctgaaaccaattttggcgatgaagtcgtcaaaaaattaggtttgaatccggatcaggtctacaaaacgctgctggtggcagtgaacggtgatatgaaacaccttgccgtggccgttacgccggtcgcaggtcaactggatcttaaaaaagtagcaaaagcgc                                                                                                                                                                                                                                                                 <  1:286079‑M1/3‑1 (MQ=255)                                                                                                                gCGAACCTGTCGATCCGGCGAAATCTTCCCGTATGGCGACATTAAACTTCGATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGAGGCGGAAGTTCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTGTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCTGATGTTTGCATCCGGCACAATGCTTAATCGCGACGGGCGATATCAGCAAAtt                                                                                                                                                 <  1:595712/274‑1 (MQ=255)                                                                                                                 cggaCCGGTCGATCCGGCGAAAACTTACCGTTGGGCGACATTAAACTTCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTCTATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTg                                                                                                                                               <  1:88182/272‑1 (MQ=255)                                                                                                                    aCCGGTCGATCCGGCGAAAACTTACCGTATGGCGACATTAAACTTCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGGGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGCTGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAAACCGGAAGTGCCGGATGTTTGCATCCgg                                                                                                                                                                                      >  1:15585/1‑233 (MQ=255)                                                                                                                                                 tGGCGACATTAAACTTCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTgccgc                                                                                                               >  1:287132/1‑275 (MQ=255)                                                                                                                                                        cttAAACTTCAATCNCACCGGCGGTGAGGGCTATCCGCGCCTTGATAACAAAACGGGTTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTGCCGCCAGTTCg                                                                                                        <  2:529233/274‑1 (MQ=255)                                                                                                                                                                 cAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAAACGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTGCCGCCAGTGCGAAAACCAGt                                                                                               >  1:56634/1‑275 (MQ=255)                                                                                                                                                                      ccACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACAGGCTTTATTGATGCAGAAGTGCTGAAAGCGTATATCCAGAAAAGCGCGCCGCTGGATGTGAGTGTTTATGAACGGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCGGGCACAATGCTTAATAGCGGCGGGCGATATAAGCAAATTTGGCATCGAGGATCTTTGCAAGATCGCCTGCCGCCAATTCGATATCCAGTCcgc                                                                                           >  1:150920/1‑274 (MQ=255)                                                                                                                                                                                          ccGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGc                                                                                                                                                                                                                           >  2:285485/1‑126 (MQ=255)                                                                                                                                                                                              gcCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGc                                                                                                                                                                                                                       <  1:285490/126‑1 (MQ=255)                                                                                                                                                                                                                          tACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGAt                                                                                                                                                                                                  >  1:285002/1‑119 (MQ=255)                                                                                                                                                                                                                          tACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTGCCGCCAGTTCGATATCCAGTCCGCGCTTGCCGCCGGAAACATAAATAGTGGCAAATTCTTGTGCGGGGGCGTCGATa                                      >  1:310548/1‑275 (MQ=255)                                                                                                                                                                                                                              ggCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGttt                                                                                                                                                                                              <  2:284997/119‑1 (MQ=255)                                                                                                                                                                                                                                cTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTAGCATCGAGGATCTTTGCCANATCGCCTGCCGCCAGTTCGATATCCAGTCCGCGCTTGCCGCCGGAAACATAAATAGTGGCAAATTCTTGTGCGGGGGCGTCGATAATCGt                                 >  1:559584/1‑274 (MQ=255)                                                                                                                                                                                                                                          gacGAAGGNCGGAAAGCGTAGATCCAGAAAAGCTCGCCGCTGGATGTGGTTGTTTATGAACCGAAAGTTGAGGTGAGCTGGCATTAATCCGAAAGGGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTGCCGCCAGTTCGATATCCAGTCCGCGCTTGCCGCCGGAAACATAAATAGTGGCAAATTCTTGTGCGGGGGCGTCGATAATCGTTGGCAGACGt                       <  2:287127/272‑1 (MQ=255)                                                                                                                                                                                                                                          gCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAgtgt                                                                                                                                                                                                                                                    >  1:137482/1‑53 (MQ=255)                                                                                                                                                                                                                                          gCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGc                                                                                                                                                                                                       >  1:23082/1‑98 (MQ=255)                                                                                                                                                                                                                                              aaGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTAt                                                                                                                                                                                                                                                <  2:137481/53‑1 (MQ=255)                                                                                                                                                                                                                                              aaGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGa                                                                                                                                                                                                   <  2:23081/98‑1 (MQ=255)                                                                                                                                                                                                                                              aaGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTGCCGCCAGTTCGATATCCAGTCCGCGCTTGCCGCCGGAAACATAAATAGTGGCAAATTCTTGTGCgggg                                               <  1:195331/246‑1 (MQ=255)                                                                                                                                                                                                                                                   cTGAAAGCGTATATCAAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAAcc                                                                                                                                                                                                                                           >  2:440698/1‑53 (MQ=255)                                                                                                                                                                                                                                                       aaGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAg                                                                                                                                                                                                                                                       <  1:482950/37‑1 (MQ=255)                                                                                                                                                                                                                                                       aaGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGaaa                                                                                                                                                                                                                                       <  1:440705/53‑1 (MQ=255)                                                                                                                                                                                                                                                        aGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTgcc                                                                                                                 >  2:313236/1‑170 (MQ=255)                                                                                                                                                                                                                                                           tcttaaaaaagtagcaaaagCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCa                                                                                                                                                                                                                      <  1:227113‑M1/46‑1 (MQ=255)                                                                                                                                                                                                                                                           gTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAaggtg                                                                                                                                                                                                                                   >  2:566445/1‑53 (MQ=255)                                                                                                                                                                                                                                                            tataTCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTGCCGCCa                                                                                                             <  1:313241/170‑1 (MQ=255)                                                                                                                                                                                                                                                            cttaaaaaagtagcaaaagCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCa                                                                                                                                                                                                                      <  2:679173‑M1/46‑1 (MQ=255)                                                                                                                                                                                                                                                             atatCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGaa                                                                                                                                                                                                                                             >  2:685375/1‑41 (MQ=255)                                                                                                                                                                                                                                                             atatCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCAAGATCGCCTGCCGCCAGTTCGATATCCAGTCCGCGCTTGCCGCCGGAAACATAAATAGTGGCAAATTCTTGTGCGGGGGCGTCGATAATCGTTGGCAGACGTTTTTTCTGCCCCAGTGGGCt   >  1:649746/1‑275 (MQ=255)                                                                                                                                                                                                                                                               atCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAaggtgaggt                                                                                                                                                                                                                               <  1:566458/53‑1 (MQ=255)                                                                                                                                                                                                                                                               aaaaaagtagcaaaagCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTaa                                                                                                                                                                                                                  >  2:227111‑M1/17‑66 (MQ=255)                                                                                                                                                                                                                                                                accAGAAAAGATTCCCGCTATAGGGTAGGGTTTATGTACCTAAGGGTGGGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTGTGCATCCGGCACAATGCTTAATCGCGGCGGGCTATATCAGCAAATTTGGCAGCGAGGATCTTTGCCAGATCGCCTGCCGCCAGTTCGATATCCAGTCCGCGCTTGCCGCCGGAAACATAAATAGTGGCAAATTCTTGTGCGGGGGCGTCGATAAGCGTTGGCAGACGTTTTTTCTGCCCCAGTGGGCTa  <  2:150919/272‑1 (MQ=255)                                                                                                                                                                                                                                                                aaaaagtagcaaaagCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTaa                                                                                                                                                                                                                  >  1:679187‑M1/16‑65 (MQ=255)                                                                                                                                                                                                                                                                 ccAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGa                                                                                                                                                                                                                                         <  1:685389/41‑1 (MQ=255)                                                                                                                                                                                                                                                                   aGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGaaa                                                                                                                                                                                                           >  2:292110/1‑69 (MQ=255)                                                                                                                                                                                                                                                                       aaGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGc                                                                                                                                                                                                       <  1:292115/69‑1 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                  ATTACCTGACCGCCGTCGCGCAGATGAAGCCAGATTCAGGTGCCTACCCGCAATTTGCCAACGTTAGCTTTGTGGCGAAAGACGGCAAACTGAACGACCTTAAAATCAAAGGCGAACCGGTCGATCCGGCGAAAACTTACCGTATGGCGACATTAAACTTCAATGCCACCGGCGGTGATGGATATCCGCGCCTTGATAACAAACCGGGCTATGTGAATACCGGCTTTATTGATGCCGAAGTGCTGAAAGCGTATATCCAGAAAAGCTCGCCGCTGGATGTGAGTGTTTATGAACCGAAAGGTGAGGTGAGCTGGCAGTAATCCGAAAGTGCCGGATGTTTGCATCCGGCACAATGCTTAATCGCGGCGGGCGATATCAGCAAATTTGGCATCGAGGATCTTTGCCAGATCGCCTGCCGCCAGTTCGATATCCAGTCCGCGCTTGCCGCCGGAAACATAAATAGTGGCAAATTCTTGTGCGGGGGCGTCGATAATCGTTGGCAGACGTTTTTTCTGCCCCAGTGGGCTA  >  CP009273/501703‑502230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.