New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 719119	38 (0.950)	3 (0.080)	3/294	NT	7.3%	coding (752/2685 nt)	kdpD	fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein
	?	CP009273	= 719181	40 (1.050)					coding (690/2685 nt)	kdpD	fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein

CTACCGCTTTCTCTTCCGCTGGATCAGAAAGTGTTGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACGTAAGGCGCTGAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATCGTCCGGGGGCAAGTCCACCAGCACCACGTCGTCGGCGGCATCGAAAAAAGGATCGGGCACGGTTT  >  CP009273/718886‑719380                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                      cTACCGCTTTCTCTTCCGCTGGATCAGAAAGTGTTGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACGTAAGGCGCTGAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGAGCCGCTGCGCGGACCAGTTCTTCGCTGCCGGTGTTATGGCCGCTGCATAAAAGGACCGCGCCGCGCGTGTGCCACCCGTCCTCTTCGCCAGGAGGcccagcc                                                                                                                                                                                                                              >  2:324614/1‑271 (MQ=255)       cgttCTCTGCCGCTGGAGCAGAAAGGGTTGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACGTACGGCGCTGAGAATTGCCCGACGGTTGTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCTCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGgcg                                                                                                                                                                                                                        <  1:452359/273‑1 (MQ=255)       cTTTCTCTTCCGCTGGATCAGAAAGTGTTGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACGTAAGGCGCTGAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCCGTTTTCCGCTGCCGGGGTTATGGCCGCGGCATAACAGGCCCGCGTGGCGCGTGTGCGACACGTTCACTGCGCCCCGTTGCACNCGccggccg                                                                                                                                                                                                                        >  2:287007/1‑270 (MQ=255)                    tGGATCAGAAAGTGTTGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACGTAAGGCGCTGAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGAtcgcgtc                                                                                                                                                                                                                                                                      <  1:729771/216‑1 (MQ=255)                                 gtTGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACATAAGGCGCTGAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCTGTGTTATGGCCGNTGCATAAANGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCACCCGCCAAGCGCGCATTTGCTCAACAAAGCGATCgg                                                                                                                                                                                               >  1:479339/1‑274 (MQ=255)                                 ggtGCCGTTTCCGCGCCCAGTTCCTGCGTCGGCCGTAAGGCGCTGAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGGGCAGGGCAGGGGTTTCAACATACCCCGCGTGCCAGACGCGACCCAGCCGTGACGCCAGCCCCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCgg                                                                                                                                                                                               <  1:49081/272‑1 (MQ=255)                                  ttGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACGTAAGGCGCTGAGTATTGCCCGGCGATTTTTTTCCGGTAAGGGGTGCAGGGCAGGGGTTACAACATACACCGCGTGCCAGACGCAACCACGCCGTGACGACAGCCCAGCCTCCGCGCGTACACGTGTTCATCTGCAGGAGTGATGGCATATGCAGAAAATGAACGCATGGCGCCAGTCCCCAGCCTTCACTTCGCCAGCAGGCCCACGCCAGGCGGTCCTTTGATCAGCAAcgcgcttggga                                                                                                                                                                                             >  2:49080/1‑268 (MQ=255)                                           ccGCGCCCAGTTCCTGCTCCAGCCGTAAGGCGCTTAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGgcg                                                                                                                                                                                     <  1:324620/274‑1 (MQ=255)                                           ccGCGCCCAGTTCCTGCGCCAGCCGTGAGGCGCTGAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGgcg                                                                                                                                                                                     <  1:287012/274‑1 (MQ=255)                                                                                     cccGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGc                                                                                                                                                                                                                                            >  2:586940/1‑177 (MQ=255)                                                                                         aCGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAgg                                                                                                                                                                                                                                        <  1:586953/177‑1 (MQ=255)                                                                                              tgttttccGGTAAGCGGTGCAGGGCAGGGGTTTCCACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTtgatgagcaaatgcgcgcctggcgggggcatcctggcgaagagaa                                                                                                                                                                                                                          <  2:189694‑M1/184‑46 (MQ=255)                                                                                                                            tttCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTCGCTCATCAACGCGATCGGNAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCCCCGCCCGCCCGGCAataca                                                                                                    >  1:536122/1‑272 (MQ=255)                                                                                                                                           cgTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTc                                                                                    >  1:188511/1‑275 (MQ=255)                                                                                                                                            gTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCg                                                                                                                    >  2:646843/1‑242 (MQ=255)                                                                                                                                             tGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTTTGCGACACTTTCTCTTCGCCAGGTTGCCCCCGCCAGGCCCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGGGCCGGGAGATCAGGATACCCTTGCGGAAAAAATGGTCAAAGGCGCGCTCCGCCGGGCCGGCCATATAGAATTTGccttccttg                                                                                    >  2:337763/1‑272 (MQ=255)                                                                                                                                             tGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCtcatca                                                                                                                                                                                                         <  1:410275/156‑1 (MQ=255)                                                                                                                                                cAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTg                                                                                                                <  1:646857/242‑1 (MQ=255)                                                                                                                                                 cgccGCTACCCGGCCGTGACTCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGc                                                                              <  1:337769/272‑1 (MQ=255)                                                                                                                                                   aCGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCCGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTc                                                                                                                                                                         >  2:649109/1‑182 (MQ=255)                                                                                                                                                      gtcccacgCCGTGCNCCCAGCCGCTAGCCTGCGCGTCCCCGTTTTTCGCTGCCGGTTTTATGGCCGATGCATAAAAGGATCCCGTCGCGCGTGTGCCACACTTTCTCCTCGCCAGGATGCCCCCGCCGGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGgcg                                                                         <  2:536112/268‑1 (MQ=255)                                                                                                                                                       tACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCgcgc                                                                                                                                                                     <  1:649123/182‑1 (MQ=255)                                                                                                                                                                   aCGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGcc                                                                                                                  >  1:454618/1‑221 (MQ=255)                                                                                                                                                                       cAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGcc                                                                                                              <  2:454611/221‑1 (MQ=255)                                                                                                                                                                        aGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCCCACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTAc                                                                                                                                                                                         >  2:603969/1‑145 (MQ=255)                                                                                                                                                                            gcgccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCATCGCGATCGGCAGTACGgcg                                                                                                                                                                                     <  1:603982/145‑1 (MQ=255)                                                                                                                                                                            gcgccgcTGCGCGGACCAGTTTTTCGCGGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGc                                                                                            <  1:317635/234‑1 (MQ=255)                                                                                                                                                                                  cTGCGCGGACCAGTTTTTCGCTGCTGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATCGTCCGGGGGCAAGTCCACCAGc                                             <  1:27976/275‑1 (MQ=255)                                                                                                                                                                                              gTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGc                                                                                            <  1:275376/216‑1 (MQ=255)                                                                                                                                                                                                    cGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTtgatgagcaaatgcgcgc                                                                                                                                                                                                                                                     >  1:305842‑M1/1‑39 (MQ=255)                                                                                                                                                                                                        gCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTtgatgagcaaatgcgcgcctgg                                                                                                                                                                                                                                                 <  2:305837‑M1/57‑23 (MQ=255)                                                                                                                                                                                                         ccGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAAGGTTCAATGGCGCGCTCCGCCTGc                                                                                                               >  2:95611/1‑186 (MQ=255)                                                                                                                                                                                                                 aTGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATc                                                                   >  2:337361/1‑222 (MQ=255)                                                                                                                                                                                                                         tGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAacgcga                                                                                                                                                                                                   <  2:223669‑M2/86‑7 (MQ=255)                                                                                                                                                                                                                         tGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAa                                                                                                                                                                                                        <  1:263341‑M2/81‑2 (MQ=255)                                                                                                                                                                                                                         tGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCACGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTACAGCCGCTGGCGCAGATCGTCCGGGGGCAAGTCCACCAGCCCCACGTCGTCGGCGGCATCGAAAAAAGGATAGGGCACg      >  1:709427/1‑275 (MQ=255)                                                                                                                                                                                                                             tAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAacgcg                                                                                                                                                                                                    >  2:263338‑M2/1‑76 (MQ=255)                                                                                                                                                                                                                             tAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCgg                                                                                                                                                                                               <  1:223671/86‑1 (MQ=255)                                                                                                                                                                                                                              aaaaGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTc                                                                                                                                                                         >  2:323516/1‑107 (MQ=255)                                                                                                                                                                                                                              aaaaGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATCGTCCGGGGGCAAGTCCACCAGCACCACGTCGTCGGCGGCATCGAAAAAAGGAACGGGCACGGttt  >  1:419050/1‑274 (MQ=255)                                                                                                                                                                                                                                  ggATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCgcgc                                                                                                                                                                     <  1:323522/107‑1 (MQ=255)                                                                                                                                                                                                                                   gATCGCGTtgatgagcaaatgcgcgcctggcgggggcatcctggcgaagag                                                                                                                                                                                                                            <  1:341742‑M1/51‑44 (MQ=255)                                                                                                                                                                                                                                   gATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTc                                                                                                                                                                         >  2:512816/1‑102 (MQ=255)                                                                                                                                                                                                                                     tcgcgtcgcgCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGc                                                                                                                                                                               >  1:80884/1‑94 (MQ=255)                                                                                                                                                                                                                                     tcgcgtcgcgCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAg                                                                                                                                                                   >  2:57953/1‑106 (MQ=255)                                                                                                                                                                                                                                     tcgcgtcgcgCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATCGTCCGGGGGCAAGt                                                     >  1:304336/1‑216 (MQ=255)                                                                                                                                                                                                                                     tCGCGTtgatgagcaaatgcgcgcctggcgggggcatcctggcgaagagaaagtgtggcacacgcgcgacgcgatccttttatgca                                                                                                                                                                                       <  2:223669‑M1/86‑81 (MQ=255)                                                                                                                                                                                                                                      cgcgTtgatgagcaaatgcgcgcctggcgggggcatcctggcgaagagaaagtgtggcacacgcgcgacgcgatcctttta                                                                                                                                                                                           >  2:263338‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                       gcgtcgcgCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCgcgc                                                                                                                                                                     <  1:512825/102‑1 (MQ=255)                                                                                                                                                                                                                                        cgtcgcgCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTAc                                                                                                                                                                                         >  2:704387/1‑81 (MQ=255)                                                                                                                                                                                                                                         gtcgcgCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGt                                                                                                                                                                           <  2:80883/94‑1 (MQ=255)                                                                                                                                                                                                                                         gtcgcgCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCg                                                                                                                                                               <  1:57954/106‑1 (MQ=255)                                                                                                                                                                                                                                         gtcgcgCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATCGTCCGGGGGCAAGTccac                                                 <  2:304331/216‑1 (MQ=255)                                                                                                                                                                                                                                          ttgatgagcaaatgcgcgcctggcgggggcatcctggcgaagagaaagtgtggcacacgcgcgacgcgatccttttatgca                                                                                                                                                                                       <  1:263341‑M1/81‑81 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                      CTACCGCTTTCTCTTCCGCTGGATCAGAAAGTGTTGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACGTAAGGCGCTGAGAATTGCCCGACGTTTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATCGTCCGGGGGCAAGTCCACCAGCACCACGTCGTCGGCGGCATCGAAAAAAGGATCGGGCACGGTTT  >  CP009273/718886‑719380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.