New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1413126 =	55 (1.370)	22 (0.570)	8/298	NT	29.0%	coding (199/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
	?	CP009273	1413206 =	55 (1.430)					coding (279/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein

ATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGTTTTAATCGTTAGCTTACTGTGTGCTTCTCCAACCATCGGCGCGCACCAGTTTCGGTTTTAAATG  >  CP009273/1412948‑1413468                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                       aTTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGATTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATT‑CTTACAAAGCAAAGAGTATTGCTTCGTTTATTTTAAAAAAAAAATGCATTATTTaa                                                                                                                                                                                                                                                       >  1:646497/1‑275 (MQ=255)   tgttgAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTTCTTCGTTTATCTGAGAAAGAAATCTCTGTATTTaaa                                                                                                                                                                                                                                                      >  1:147309/1‑275 (MQ=255)      taaaaTTTTTTGATTACTAGTCACTATAAAGACTTATGTATACGTTTATCCTTTTTGGTCTCACTCTCTTGCTGATACCTAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGAt                                                                                                                                                                                                                                                   <  2:585691/273‑1 (MQ=255)                             cTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttat                                                                                                                                                                                                                            <  1:61754/275‑1 (MQ=255)                              aaaaagaaatattGTATACTATTATTATTTTTGGTCTCACTCTCTGGCTTATTCCTAAATAGTTTACTTTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCGTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttatt                                                                                                                                                                                                                           <  2:608630/263‑1 (MQ=255)                                          tGTAAAAGATTATCNTTTTTGGTCTTACTCTCTGGCTGATACCGTAAGATTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCTCCATTTCCTTCTCAAGAATGCGAGCATATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTAGCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCt                                                                                                                                                                                                               <  2:542154/275‑1 (MQ=255)                                               aCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGCGTATTGCTTCGTTTATCTTCGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATATTATTATCACTTCTCCCTgta                                                                                                                                                                                                           >  1:608643/1‑272 (MQ=255)                                               aCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAgaaagaaa                                                                                                                                                                                                                                                                    >  1:142719/1‑217 (MQ=255)                                               aCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATc                                                                                                                                                                                                                                >  2:211716/1‑253 (MQ=255)                                                cGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTaa                                                                                                                                                                                                                                                       >  1:684423/1‑229 (MQ=255)                                                 gATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAAt                                                                                                                                                                                                                                                                   >  2:57389/1‑216 (MQ=255)                                                   ttATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGc                                                                                                                                                                                                                                                                <  2:142718/217‑1 (MQ=255)                                                   ttATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttat                                                                                                                                                                                                                            <  1:211718/253‑1 (MQ=255)                                                    tATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAAt                                                                                                                                                                                                                                                                   >  1:174239/1‑213 (MQ=255)                                                    tATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGAt                                                                                                                                                                                                                                                   <  2:684409/229‑1 (MQ=255)                                                     aTCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCt                                                                                                                                                                                                                                                               <  1:57390/216‑1 (MQ=255)                                                        aTTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCt                                                                                                                                                                                                                                                               <  2:174237/213‑1 (MQ=255)                                                             tGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCATTAAAACAGAAAATCTAATTATCACTTCTCCTTGACGTAACCCTGtctctt                                                                                                                                                                                            >  2:676206/1‑270 (MQ=255)                                                                 ctcACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTNTCTTTCGTGGCCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTcc                                                                                                                                                                                                                <  1:676220/251‑1 (MQ=255)                                                                                   ccGAAATAGTTTACTTTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCTTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTGCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCTGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGcat                                                                                                                                                                      <  1:418756/275‑1 (MQ=255)                                                                                                  gTCGCATTCAATGCTTATACTAAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAACAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttatt                                                                                                                                                                                                                           <  1:155420/207‑1 (MQ=255)                                                                                                    cGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTCTTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTTTATTTAAAGATTTCCTTAAACCAGGAAATCTTATTATAACTTCTCATTGCCg                                                                                                                                                                                                          >  2:536111/1‑222 (MQ=255)                                                                                                        ttCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATNATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAATTCTTATTATCACTTCTCCTTGCCGTAAc                                                                                                                                                                                                      <  1:536121/222‑1 (MQ=255)                                                                                                                          aTACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTGTTTCGTGTTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAACGCATTATTCATTACTACCAGAGCAACGAGCATTGCTTCGTTTATATGAGCAAGTAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGAAAACTGTTCttatta                                                                                                                               >  1:132963/1‑275 (MQ=255)                                                                                                                          aTACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCAGTATTTAAAGATTTCCTTAAAACa                                                                                                                                                                                                                                       >  1:669015/1‑171 (MQ=255)                                                                                                                              cTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGaa                                                                                                                                                                                                                                   <  2:669001/171‑1 (MQ=255)                                                                                                                              cTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGCATTTGACGATTTACTTAAAACAGGAAAt                                                                                                                                                                                                                                 <  1:500851/173‑1 (MQ=255)                                                                                                                                              tttatttttttttttttttttCTTGTTTGCCTTTTCCTTCTAAAGTTTGCGTGATATTATTAAAAAGCATTTTTCA‑TACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACt                                                                                                           <  2:646483/261‑1 (MQ=255)                                                                                                                                                                        tccacATTTCGTTCCCAATATTTCGATCACATATTCAAAAGCATTATTCATTACTACCAGGACAAAGAGTGTTGCTTCGTTTATCTGAGAAAGAAATCGCTTTAATTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGCTTATGAAAAAAATAAAACGGAAGGGCATCATTCAACATCAGTGCGATAGCGCAAACTCTTCTTATAATCTCGTCACCGAAAACTACTCCCATCTTATGAATTTATTCTGGAAc                                                                                 <  2:132962/271‑1 (MQ=255)                                                                                                                                                                                    TCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGa                                                                                                                                                    <  1:149631‑M1/196‑1 (MQ=255)                                                                                                                                                                                        AAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAgc                                                                                                                                                >  2:149630‑M1/1‑196 (MQ=255)                                                                                                                                                                                               cGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGTAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGTTTTAATCg                                                          <  1:451541/275‑1 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGa                                                                                                                                                                                                                                                    >  1:129927‑M2/64‑84 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGaaaaaa                                                                                                                                                                                       >  1:559189‑M2/64‑145 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGaaaaaa                                                                                                                                                                                       >  1:550261‑M2/64‑145 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAAtt                                                                                                                                                                                     >  2:255841‑M2/64‑147 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAAt                                                                                                                                                                                      >  2:440752‑M2/64‑146 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAAt                                                                                                                                                                                      >  1:482321‑M2/64‑146 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAAt                                                                                                                                                                                      >  2:23555‑M2/64‑146 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAAt                                                                                                                                                                                      >  1:192374‑M2/64‑146 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCaga                                                                                                                                                        >  1:605273‑M2/64‑176 (MQ=255)                                                                                                                                                                                                    caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGa                                                                                                                                                    >  1:696559‑M2/64‑180 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTc                                                                                                                                                                                                                                                <  2:129926‑M2/25‑1 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAg                                                                                                                                                                                   <  2:550250‑M2/86‑1 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAg                                                                                                                                                                                   <  2:559177‑M2/86‑1 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGaa                                                                                                                                                                                 <  1:255844‑M2/88‑1 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                                                                                                                                                                  <  1:23556‑M2/87‑1 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                                                                                                                                                                  <  2:192372‑M2/87‑1 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                                                                                                                                                                  <  1:440759‑M2/87‑1 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                                                                                                                                                                  <  2:482312‑M2/87‑1 (MQ=255)                                                                                                                                                                                                        actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAgc                                                                                                                                                <  2:696545‑M2/121‑1 (MQ=255)                                                                                                                                                                                                        actcgttgcgctgatagtaatgaataatgcttttgaatatttgctcgcaatcttgagaaAGAAATCGCTGAATTTAAAGATTTCCTTAAAAAAGGAAATCTTATTATCACTACTCCTTGCCGTAACCCGGTGATGAACAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGa                                                                                                                                                    <  2:605260‑M2/117‑1 (MQ=255)                                                                                                                                                                                                               aGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTaa                                                                                                                                                                                                                                                       >  2:338195/1‑70 (MQ=255)                                                                                                                                                                                                                   ttattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGAt                                                                                                                                                                                                                                                   <  1:338201/70‑1 (MQ=255)                                                                                                                                                                                                                   ttattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAAc                                                                                                                                                                                >  2:47653/1‑137 (MQ=255)                                                                                                                                                                                                                    tattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGACCTGAAGGGCATCATTCAAACTCAGAGTGATAGCGCAAACAGTTCTTATTAtc                                                                                                                             >  2:475282/1‑187 (MQ=255)                                                                                                                                                                                                                       tCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGaa                                                                                                                                                                            <  1:47654/137‑1 (MQ=255)                                                                                                                                                                                                                        cATNACTACCAGAGCATCGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATGAGAGTGACAGCGCAAACTGTTCTTATTATCTCGt                                                                                                                         <  1:475291/187‑1 (MQ=255)                                                                                                                                                                                                                          aatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAAt                                                                                                                                                                                      >  2:442903‑M2/42‑124 (MQ=255)                                                                                                                                                                                                                           tactacCAGAGCAACGAGTATTGCTTCGTTTATCTGAgaaagaaa                                                                                                                                                                                                                                                                    >  1:404433/1‑45 (MQ=255)                                                                                                                                                                                                                           tactacCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCa                                                                                                                                                                >  1:70675/1‑145 (MQ=255)                                                                                                                                                                                                                           tactacCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATg                                                                                                >  2:211311/1‑209 (MQ=255)                                                                                                                                                                                                                              aataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                                                                                                                                                                  <  1:442910‑M2/87‑1 (MQ=255)                                                                                                                                                                                                                               acCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGc                                                                                                                                                                                                                                                                <  2:404426/45‑1 (MQ=255)                                                                                                                                                                                                                               acCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACAt                                                                                                                                                            <  2:70674/145‑1 (MQ=255)                                                                                                                                                                                                                               acCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGt                                                                                            <  1:211313/209‑1 (MQ=255)                                                                                                                                                                                                                                ccAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAAc                                                                                                                                                                                                                                        >  2:439476/1‑68 (MQ=255)                                                                                                                                                                                                                                ccAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAAc                                                                                                                                                                                                                                        >  2:102407/1‑68 (MQ=255)                                                                                                                                                                                                                                ccAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACa                                                                                                                                                                                                                                       >  1:330720/1‑69 (MQ=255)                                                                                                                                                                                                                                ccAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAgcg                                                                                                                                               >  2:693957/1‑157 (MQ=255)                                                                                                                                                                                                                                   gagCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGa                                                                                                                                                                             >  1:584228/1‑124 (MQ=255)                                                                                                                                                                                                                                    agCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGaa                                                                                                                                                                                                                                   <  2:330714/69‑1 (MQ=255)                                                                                                                                                                                                                                    agCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGa                                                                                                                                                                                                                                    <  1:439483/68‑1 (MQ=255)                                                                                                                                                                                                                                    agCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGa                                                                                                                                                                                                                                    <  1:102408/68‑1 (MQ=255)                                                                                                                                                                                                                                    agCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCaaa                                                                                                                                           <  1:693971/157‑1 (MQ=255)                                                                                                                                                                                                                                       aaCGAGTATTGCTTCGTTTATCTGATAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAggg                                                                                                                                                                         <  2:584215/124‑1 (MQ=255)                                                                                                                                                                                                                                        aCGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGGTTTAATCGTTAGCTTACTGTGTGCTTTTCCAACCACGAGCTCGCACCaa                 >  2:36601/1‑274 (MQ=255)                                                                                                                                                                                                                                        aCGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCAGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCaaa                                                                                                                                           >  2:300893/1‑153 (MQ=255)                                                                                                                                                                                                                                            gTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCAGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGt                                                                                                                                       <  1:300898/153‑1 (MQ=255)                                                                                                                                                                                                                                                     cGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCa                                                                                                                                             >  1:271002/1‑138 (MQ=255)                                                                                                                                                                                                                                                       tttATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGTTTTAATCGTTAGCTTACTGTGTGCTTCTCCAACCATCGGCGCGCACCAGTTTCGGTTTTAAATg  >  2:169962/1‑275 (MQ=255)                                                                                                                                                                                                                                                         tATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACt                                                                                                                                         <  2:270998/138‑1 (MQ=255)                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                       ATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGTTTTAATCGTTAGCTTACTGTGTGCTTCTCCAACCATCGGCGCGCACCAGTTTCGGTTTTAAATG  >  CP009273/1412948‑1413468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.