New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1788762	49 (1.220)	4 (0.110)	4/290	NT	9.1%	coding (648/981 nt)	btuC	vitamin B12 transporter subunit: membrane component of ABC superfamily
	?	CP009273	= 1789289	34 (0.910)					coding (121/981 nt)	btuC	vitamin B12 transporter subunit: membrane component of ABC superfamily

TTAAAGTGATGATAAGCGCGCCAGCAATCGCACACAGCCCTAGCGCCCAGTTGGGGAGTTGCCCTTGCCCAAGCAATACCGCGGCGATAAGCCCCACGCCTGCGCCGTTAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAGTGTCAGCATGGTATCCGTTCTGCTGAAGTGTCATGGCGTTGATTTTACGGTGACTCTTCGACAGTGA  >  CP009273/1789019‑1789467                                                                                                                                                                                                                                                                               |                                                                                                                                                                                   ttAAAGTGATGATAAGCGCGCCAGCAATCGCACACAGCCCTAGCGCCCAGTTGGGGAGTTGCCCTTGCCCAAGCAATACCGCGGCGATAAGCCCCACGCCTGCGCCGTTAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCACCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCAACGAGGAGTAAACCAGTccccgccc                                                                                                                                                                                >  2:620162/1‑271 (MQ=255)                         cAATCCCATACAGCCCTAGCTCCCAGTTGGGCAGTTGCCCTTGCCCAAGCAATACCGCGGCGATAAGCCCCACGCCTGCGCCGTTAGAGACNCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATGACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGATGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCaa                                                                                                                                                        <  1:541224/275‑1 (MQ=255)                                                             gcactagcccCAGCCACACCGCGGCGAGAAGCCCCACCCCGGCGCCGTTAGAGACTCCAAGTAGTCCAGGTTCTGCCAGAGGAGTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGa                                                                                                                     <  2:96931/268‑1 (MQ=255)                                                                        aGCAATACCGCGGCGATAAGCCCCACGCCTGGGCCGTTAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCNACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCAtaataa                                                                                                         <  1:620175/275‑1 (MQ=255)                                                                        aGCAATACCGCGGCGATAAGCCCCACGCCTGCGCCGTTAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCACCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCAtaataa                                                                                                         >  1:120954/1‑275 (MQ=255)                                                                                               cACGCCTGCGCCGTTAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAAcag                                                                                                                      >  2:602294/1‑237 (MQ=255)                                                                                                   ccTGCGCCGTTAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAg                                                                                                                  <  1:602307/239‑1 (MQ=255)                                                                                                       cgcCGTTAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTACAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTNTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATCACCAGCGAATATTTTGTCGCTGTTGTTGGCgg                                                                          >  1:529257/1‑275 (MQ=255)                                                                                                            ttAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCACAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGATGGCGGGCaa                                                                      >  1:109475/1‑274 (MQ=255)                                                                                                                    gCCAAGTAGTCCAGGTTCTGCCAGAGAATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTCTTCACCGGCGCANAGGCTTAANAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAGTGTCAGc                                                              >  1:476055/1‑274 (MQ=255)                                                                                                                     cccagtcttCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAAGACAGCCAGCGTACATGGCAGGCGAATTTGCCAGACGGACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATAGTGCACCGGCGCAAATGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACGGGCATAATAACCAGCGAATATTTTGTCGCTGGTGTTGGCGGGCAAGTGTCAGCa                                                             <  2:109474/266‑1 (MQ=255)                                                                                                                               atggttCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCTAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCtggcgagatctcggcgcggcaactgggtttacccctgtggttctggcgcaatgtgctggtggcagcgaccggctggatggttggcgtcagtgtggcgctggcgggtgctatcggctttattggtctggt                                                   >  1:154129‑M2/3‑145 (MQ=255)                                                                                                                                    tCTGCCAGAGGATTTTCAAACAACGCCTTCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGAAAAGGCTTAAGAGAAGCNCCAGCAGCATCAAAACTGACAGGCATAATAACCCGCGAATATTTTGTCGCTGATGTTGGCGGGCAAATGTCAGCATGGTATCCGTTctgct                                             >  1:553580/1‑275 (MQ=255)                                                                                                                                                        caacGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGAAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAgcgc                                                                                                                                       >  2:48543/1‑165 (MQ=255)                                                                                                                                                            gCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCcagc                                                                                                                                   <  1:48544/165‑1 (MQ=255)                                                                                                                                                                         cgcCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAGTGTCAGCATGGTATCCGTTCTGCTGAAGTGTCATGGCGTTGATTTTACGGTGACTCTTCGa        >  1:68371/1‑275 (MQ=255)                                                                                                                                                                           ccGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGCATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGgc                                                                                                                                                            >  1:127709/1‑125 (MQ=255)                                                                                                                                                                           ccGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCtggcgagatctcggcgcggcaactgggtttacccctgtggttctggcgcaatgtgctggtggcagcgaccggctggatggttggcgtcagtgtggcgctggcgggtgctatcggctttattggtctggtgatcccccatattctccggttgtgtggtttaaccgatcatcg         <  1:89982‑M2/272‑172 (MQ=255)                                                                                                                                                                           ccGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGgc                                                                                                                                                            >  1:376155/1‑125 (MQ=255)                                                                                                                                                                               atatAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCaa                                                                                                                                                        <  2:376148/125‑1 (MQ=255)                                                                                                                                                                               atatACACAGCGCCGCACCACCCCGCAATACAGCCAGCGTACGTGGCAGGTGAATTTGTCAGACGAACAGGTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCaa                                                                                                                                                        <  2:127708/125‑1 (MQ=255)                                                                                                                                                                                   cgcCGGCGCCGCACCCCCCAGCACTCCCGCCAGCGTACGTGGCAGGCGAATTTGCCGGACTTACAGTTCGCCACGAGGAGTAAACCAGTCACCtggcgagatctcggcgcggcaactgggtttacccctgtggttctggcgcaatgtgctggtggcagcgaccggctggatggttggcgtcagtgtggcgctcgcgggtgctatcggctttattggtctggtgatcccccatattctccggttgtgtggtttaaccgatcatcgcgtatta  >  2:89981‑M2/2‑93 (MQ=255)                                                                                                                                                                                   aGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGgc                                                                                                                                                            >  1:391030/1‑117 (MQ=255)                                                                                                                                                                                       aGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATGTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCaa                                                                                                                                                        <  2:391023/117‑1 (MQ=255)                                                                                                                                                                                        gcgcCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCgg                                                                                                                                                             >  1:549/1‑111 (MQ=255)                                                                                                                                                                                            cgcCCCAACCCGCAATCCCGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTGCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCa                                                                                                                                                         <  2:549/111‑1 (MQ=255)                                                                                                                                                                                                          aTACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCtggcgagatctcggcgcggcaactgggtttacccctgt                                                                                                                                              >  1:421357‑M2/1‑70 (MQ=255)                                                                                                                                                                                                               gccagcGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCg                                                                           >  2:488043/1‑170 (MQ=255)                                                                                                                                                                                                                ccagcGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGgc                                                                                                                                                            >  2:256542/1‑88 (MQ=255)                                                                                                                                                                                                                ccagcGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCaa                                                                      >  1:652520/1‑174 (MQ=255)                                                                                                                                                                                                                  agcGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAGTGTCAGCATGGTATCCGTTCTGCTGAAGTGTCATGGCGTTGATTTTAAGGTGACTCTTCg         >  1:17949/1‑233 (MQ=255)                                                                                                                                                                                                                   gcGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCa                                                                       <  1:488052/170‑1 (MQ=255)                                                                                                                                                                                                                    cGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCtggcga                                                                                                                                                                              <  1:157839‑M2/66‑7 (MQ=255)                                                                                                                                                                                                                    cGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCaa                                                                                                                                                        <  1:256545/88‑1 (MQ=255)                                                                                                                                                                                                                    cGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAgtgt                                                                  <  2:652506/174‑1 (MQ=255)                                                                                                                                                                                                                      tACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAGTGTCAGCATGGTATCCGTTCTGCTGAAGTGTCATGGCGTTGATTTTACGGt                  <  1:1755/220‑1 (MQ=255)                                                                                                                                                                                                                        cGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCtggcgagatc                                                                                                                                                                          >  2:157837‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                              aGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAGTGTCAGCATGGTATCCGTTCTGCTGAAGTGTCATg                                  >  1:678818/1‑196 (MQ=255)                                                                                                                                                                                                                                  gAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAGTGTCAGCATGGTATCCGTTCTGCTGAAGTGTCATGGCGt                              <  2:678804/196‑1 (MQ=255)                                                                                                                                                                                                                                                               ggagTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTg                                                                                                                      >  2:211192/1‑79 (MQ=255)                                                                                                                                                                                                                                                                   tAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAg                                                                                                                  <  1:211194/79‑1 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                   TTAAAGTGATGATAAGCGCGCCAGCAATCGCACACAGCCCTAGCGCCCAGTTGGGGAGTTGCCCTTGCCCAAGCAATACCGCGGCGATAAGCCCCACGCCTGCGCCGTTAGAGACGCCAAGTAGTCCAGGTTCTGCCAGAGGATTTTCAAACAACGCCTGCATTACAGCGCCGGATATAGCCAGCGCCGCACCAACCAGCAATACAGCCAGCGTACGTGGCAGGCGAATTTGCCAGACGAACAGTTCGCCACGAGGAGTAAACCAGTCACCTGGCGAGATCCATTGTTCACCGGCGCAAAGGCTTAAGAGAAGCGCCAGCAGCATCAAAACTGACAGGCATAATAACCAGCGAATATTTTGTCGCTGTTGTTGGCGGGCAAGTGTCAGCATGGTATCCGTTCTGCTGAAGTGTCATGGCGTTGATTTTACGGTGACTCTTCGACAGTGA  >  CP009273/1789019‑1789467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.