New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2065000 =	28 (0.700)	3 (0.080)	3/304	NT	8.3%	intergenic (+1/‑20)	isrC/flu	novel sRNA, CP4‑44; putative prophage remnant/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
	?	CP009273	2065385 =	39 (0.990)					coding (366/3120 nt)	flu	CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

GCGGTGTGGCGGTTGCACTGTCTCTTGCCGCAGTCACGTCACTCCCGGTGCTGGCTGCTGACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGACCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTAC  >  CP009273/2065120‑2065656                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                gcggtgtggcggtTGCACTGTCTCTTGCCTCAGTCACGTCACTCCCGGTGCTGGCTGCTGACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATANCGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAAAAGCCAACAAAACGACTGTAACCAGTGGTGGTCTTCAGAGAGTGAAcccc                                                                                                                                                                                                                                                                        >  1:514698/1‑275 (MQ=255) gcggtgtggcggtTGCACTGTCTCTTGCCGCAGTCACGTCACTCCCGGTGCTGGCTGCTGACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGAATGACCATCAGTACCGGGCTGGC‑GTATGGGCCGGATANCGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGACACCAGTGGTGGTATTCAGAGAATGAAcccc                                                                                                                                                                                                                                                                        >  1:544036/1‑275 (MQ=255)                            ccGCAGTCACGTCACTCCCGGTGCTGGCTGCTGACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCGAATCAGGACAACCAGATTGTCTTCGGTACGACCAACGGAATGGCCATCAGTACCGGGCTGGA‑GGATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATc                                                                                                                                                                                                                                             <  1:697673/275‑1 (MQ=255)                                                     gtctgctgACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCTGTACGACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGGGAACCCCGGt                                                                                                                                                                                                                                                                     >  1:39079/3‑226 (MQ=255)                                                           tgACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGTCCAACGGAATGACAATCAGGACCGGGCTGGA‑GTATGTGCCGGATAACGAGGCAAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGAc                                                                                                                                                                                                              <  1:737042/275‑1 (MQ=255)                                                           tgACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGtctc                                                                                                                                                                                                                                                          >  2:174043/1‑231 (MQ=255)                                                           tgACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCATTCAGGGa                                                                                                                                                                                                               >  1:120611/1‑274 (MQ=255)                                                              gcgcGTGGTGTACCAGGGCGAAACCGGGAAAGGCGGACGCTTGGCAAACCATGACATCCCGGTTGACTTGGGTACAAACAACGGAATGTGCAACAGTACAGGG‑TGGAGGGATGGGCCGGGTACCGAGGCCAATACGGGCGGGCAATGGGTGCAGGATGGCGGAACAACCAACTAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAGCCCCGGTGGAAGTGTCTCAGACACGGTTAGCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACgg                                                                                                                                                                                                            <  2:86494/271‑1 (MQ=255)                                                               aTCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGac                                                                                                                                                                                                                                                      <  1:174045/231‑1 (MQ=255)                                                                          cccGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGGATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAAcacc                                                                                                                                                                                                <  1:222406/274‑1 (MQ=255)                                                                                     ccGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAAtggt                                                                                                                                                                                    >  1:33784/1‑275 (MQ=255)                                                                                        tGAACGGCGGAACACTGGCAAAGTATGAAAACCGGGTGGTCTTCGGGAGGACAAACGGAAAGACCATCAGTACCGGGCGGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACaga                                                                                                                                                                                                                          <  2:325076/234‑1 (MQ=255)                                                                                            gggcggAACAATTGCAAATCAGGAAAACCAGATGGTCTGCGGTACGCCAAACGGAATGACCAGCAGGACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGGCTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGaa                                                                                                                                                                              <  2:514689/273‑1 (MQ=255)                                                                                                                        cAGTTTGTCTTCTGTACGACAAACGGAATGACCATCAGTACCGGGCGGGC‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGNTACAGGATGGCGGAACAGCTAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCca                                                                                                                                                  <  1:581045/274‑1 (MQ=255)                                                                                                                                     gTACGCCCCACGGTATGACCATCAGTACCGGGCTCTA‑GTGTGGGGAGGATAACGAGGCCAATACCGGCTGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGGCACCAGTGGTGGTCTTCAGAGAGTGAGCCCCGGTGGAAGTGTCTCAGACACGTTTATCAGTGCCGGAGGCGGACATAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCAtt                                                                                                                                    <  1:394415/275‑1 (MQ=255)                                                                                                                                         gACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTAGAAGTGTCTCAGACACGGTTATCAGCGCCGGCGGCGGACCGAAGCGTCAGGGACGGGCAGTGAAAAACACGCTGAATGGACGCGAACAGCGGGCTGATGGAGGGGGGGTAGCCACAAGACCCGGCacgcatt                                                                                                                                >  2:715519/1‑269 (MQ=255)                                                                                                                                           ccAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGCATGGTGGCGAACAGTGGGTTCAGGAGGGGGCCNTAGGCACACGAAACGTCATAAAtaa                                                                                                                               >  2:475660/1‑272 (MQ=255)                                                                                                                                                       ccATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCGGAATGGTGGAGAAAAGTGGATGAATGAGGGGGGGATAGCCACAGGAACCGGCATTAATGTAAAggtgtgagag                                                                                                                  >  2:88805/1‑267 (MQ=255)                                                                                                                                                         taccccttgcgcggcccagttcggaggcaaccacgaaagcgcccgtcatgtgattccataccagcctgtagcaggtattcagatgtcgtttcatcagcttttccttagattgggAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAgg                                                                                                                 <  1:382474‑M2/161‑1 (MQ=255)                                                                                                                                                          tCAGTAGCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACNGGCGGGCAATGGGGACAGGCTGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCTGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGGGCCTACAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAg                                                                                                                                                               <  1:555216/227‑1 (MQ=255)                                                                                                                                                           cAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAg                                                                                                                                                                           >  1:94366/1‑214 (MQ=255)                                                                                                                                                                ccGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGa                                                                                                                                                                                                                              >  2:360552/1‑158 (MQ=255)                                                                                                                                                                    gCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACaga                                                                                                                                                                                                                          <  1:360558/158‑1 (MQ=255)                                                                                                                                                                        gA‑GTAGGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCATCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATGAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCTAGCCCGGTAc                                                                                                 <  1:715533/275‑1 (MQ=255)                                                                                                                                                                               gggCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGc                                                                                           <  1:88806/275‑1 (MQ=255)                                                                                                                                                                                                           ggCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCa                                                                                                                                                                                                                                                         >  2:476096/1‑89 (MQ=255)                                                                                                                                                                                                           ggCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGt                                                                                                                                                                                                                                                 >  1:311077/1‑97 (MQ=255)                                                                                                                                                                                                             cAATGGGTAAAGGATCGCGGAACAGCCAACAAAACGACTGTCACCAATGGGGGTCTTCAGAGAGTGAACCCCGGTGGAAGAGTCCCAAACACGGCTATCAGTGGCGGAGGCGGACAGAGCCCTCAggg                                                                                                                                                                                                                >  2:265522/1‑128 (MQ=255)                                                                                                                                                                                                               aTGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGaca                                                                                                                                                                                                                                                     <  1:476105/89‑1 (MQ=255)                                                                                                                                                                                                               aTGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATc                                                                                                                                                                                                                                             <  2:311072/97‑1 (MQ=255)                                                                                                                                                                                                                 gggTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGGCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACgg                                                                                                                                                                                                            <  1:265526/128‑1 (MQ=255)                                                                                                                                                                                                                          aTGGAGGAACAGAGAAGAAAACGACTGGCGCCAGTGGTGGTCTTCAGGGAGGGAACCCCGGGGGAAGTGGCTCAGACACGGTTATCAGGGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGACCGGAt                                                <  2:33783/275‑1 (MQ=255)                                                                                                                                                                                                                            ggCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGACCGGATg                                               >  1:126974/1‑274 (MQ=255)                                                                                                                                                                                                                            ggCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGACa                                                                                                           >  1:231047/1‑214 (MQ=255)                                                                                                                                                                                                                            ggCGGAACAGCCAACAAAACGACCGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGt                                                                                                                                                                                                                                                                     >  1:502028/1‑60 (MQ=255)                                                                                                                                                                                                                                gAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGaa                                                                                                                                                                                                                                                                 <  2:502019/60‑1 (MQ=255)                                                                                                                                                                                                                                       tcagatgtcgtttcatcagcttttccttagattgagAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAacac                                                                                                                                                                                                 >  1:65319‑M2/37‑117 (MQ=255)                                                                                                                                                                                                                                       caacaaAACGACTGTCACCANTGGNGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACCCCACGCTGAATGGTTGCGAACAGTGGATGCATGAGGGGGCGATCGCCACAGGAACCGTCATTACTGATAAGGGCTGGCCGgt                                                                                                                >  1:128856/1‑198 (MQ=255)                                                                                                                                                                                                                                        aacaaAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTg                                                                                                                                                                                                                                                                    >  2:435856/1‑49 (MQ=255)                                                                                                                                                                                                                                           atgtcgtttcatcagcttttccttagattgagAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACg                                                                                                                                                                                             <  2:65318‑M2/85‑1 (MQ=255)                                                                                                                                                                                                                                            aaaCGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAg                                                                                                                                                                                                                                                                <  1:435863/49‑1 (MQ=255)                                                                                                                                                                                                                                                               gtgtattCAGAGGGTAACCGCCGGGGGAAGGGTGTCAGGCTCCGTTAGCAGGGGCGGAGGCGGAGAGGGCCTTCAGGGGCGGGCTGTGAACAACACGCTGAATGGTGGCGAACTGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATCCCGGGGCGGAAGGGGGACCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCgggg           <  2:120610/270‑1 (MQ=255)                                                                                                                                                                                                                                                                 gtCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAGGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGACCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGAt         >  1:388126/1‑275 (MQ=255)                                                                                                                                                                                                                                                                           agTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACNCCACGCTGNATGGTGGCGAACCGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGACCGGATGCAGAAAACGGAGATACCGGGCAGTTTGTTCGCGGGGATGCCGTAc  <  1:475669/272‑1 (MQ=255)                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                GCGGTGTGGCGGTTGCACTGTCTCTTGCCGCAGTCACGTCACTCCCGGTGCTGGCTGCTGACATCGTTGTGCACCCGGGAGAAACCGTGAACGGCGGAACACTGGCAAATCATGACAACCAGATTGTCTTCGGTACGACCAACGGAATGACCATCAGTACCGGGCTGGA‑GTATGGGCCGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGGCGGAACAGCCAACAAAACGACTGTCACCAGTGGTGGTCTTCAGAGAGTGAACCCCGGTGGAAGTGTCTCAGACACGGTTATCAGTGCCGGAGGCGGACAGAGCCTTCAGGGACGGGCTGTGAACACCACGCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGACCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTAC  >  CP009273/2065120‑2065656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.