New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2071714	34 (0.850)	6 (0.160)	5/292	NT	15.0%	intergenic (+126/+316)	yeeW/yoeD	CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
	?	CP009273	= 2072110	36 (0.950)					pseudogene (49/129 nt)	yoeD	pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related

TACTGATAAACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACT  >  CP009273/2071870‑2072375                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                          tACTGATAAACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATTCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATGTATTGGTGAGAACTACGTTCAATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATACGGGCAGTAGGCTCAGAAGATGGCGCAACTACGCTTCCGGCTCNGTAcagcat                                                                                                                                                                                                                                         >  2:266965/1‑270 (MQ=255) tACTGATAAACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTNCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGt                                                                                                                                                                                                                                           >  1:530566/1‑273 (MQ=255)     gATAAACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGAt                                                                                                                                                                                                                                                    <  1:266969/260‑1 (MQ=255)                               aTGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCTGACAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTCATGGTGAGAACTACGTACCATGGCAGGATTTAGTCAACACGGTTGGAGGGCCATTACGGAAGCATGCTAAGAATAAGGCGCAGAGACGCTTCCGAGACGATACCGATCATACGGCCGGGGGCTGGCTTTCTGGccac                                                                                                                                                                                                            >  2:261600/1‑274 (MQ=255)                                                     ttGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATa                                                                                                                                                                                                                                                                          >  1:371556‑M2/1‑189 (MQ=255)                                                     atGACCTGACAAAAAAGGAAGTCCAAAACCACGGTCTGGGGAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTAGTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGTCCATTCCGTCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGaa                                                                                                                                                                                      <  2:189529/273‑1 (MQ=255)                                                        aCCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTCCGGGCCCCAAGCAGGAAGCTGAGCGATGAAggcg                                                                                                                                                                                  >  2:325834/1‑272 (MQ=255)                                                                                                gAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCAcc                                                                                                                                          <  1:424210/275‑1 (MQ=255)                                                                                                 aaaaGAAAAATANAAGCTCAGAAACCGGATTAAGGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGGGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCAc                                                                                                                                           <  2:530557/270‑1 (MQ=255)                                                                                                 aaCAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCCGCAGTATGCTCCGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGAAAAAACGCCCTACCAGGCAATGAAACAacc                                                                                                                                         >  1:258046/1‑275 (MQ=255)                                                                                                     gAAAAATCTAAGCCCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCACAGCGCTGAGGCAGGAATGAGAGGCAAAAACGCCCTACCGAGCCATTaacgggtcga                                                                                                                                       >  2:113444/1‑265 (MQ=255)                                                                                                         aaTCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTAc                                                                                                                                                          <  1:113445/250‑1 (MQ=255)                                                                                                          aTCTTAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTg                                                                                                                                 <  1:325840/274‑1 (MQ=255)                                                                                                                           ggATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAg                                                                                                                                                                                                                                       >  2:558299/1‑155 (MQ=255)                                                                                                                               tAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACgg                                                                                                                                                                                                                                   <  1:558311/155‑1 (MQ=255)                                                                                                                                aaaGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGa                                                                                                                                                                                                                                      >  1:591091/1‑151 (MQ=255)                                                                                                                                  aGTAAGCGGCAACGGAGCACCGGATTGACGCGTATTTAGTGGGGAGAACGACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCATACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTTAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGc                                                                                                        <  1:261603/275‑1 (MQ=255)                                                                                                                                    tAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGc                                                                                                                                                                                                                                  <  2:591078/151‑1 (MQ=255)                                                                                                                                      aGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCTGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCa                                                                                                      >  1:729435/1‑273 (MQ=255)                                                                                                                                      aGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCggg                                                                                                                                                      >  1:197262/1‑225 (MQ=255)                                                                                                                                              cGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAAt                                                                                                                                                                              >  1:66074/1‑193 (MQ=255)                                                                                                                                                                cTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCGGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAAt                                                                                                                                              >  1:288663/1‑207 (MQ=255)                                                                                                                                                                  tatttattGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAAAAGATTTAGCCAGCAACTAACAAATATcaattttttttaaa                                                                         >  2:564560/1‑261 (MQ=255)                                                                                                                                                                      tattGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGNAGTATGCTCAGAATATGGCTCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCAt                                                                                                  <  1:564572/245‑1 (MQ=255)                                                                                                                                                                             gcgagcttcGTTCCAAGGAGGGAGTTCGTCAACGCGTTTGTAGGGCCATTCCGGCAGTATTCTCAGAATATGGCGCAGATACGCTTCCAGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGCATCACCCGGTCATTGGAGTAGTAACCAAAGCAGAGTTAGCCAGCATGGAACAAATATATTTGGTGAAAAGTTGGTTACGGGa                                                              <  1:341586/266‑1 (MQ=255)                                                                                                                                                                             gagaACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATatggcgcagggtaaggacatcttctcttgcctgcttaatacaggacaacagtgctgtttctgtggttaatggcactataccctgtatcactgcattgtcttacagcaactgttgagggctgtcgtatgttgccggtgtttcggtagcgtcacggtcatccaccacgctgagtgaataacagttttcagcggcctttntaatcacat                                                             <  2:267929‑M2/275‑207 (MQ=255)                                                                                                                                                                              agaACTACGTTCCATGGCATGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATatggcgcagggtaaggacatcttctcttgcctgcttaatacaggacaacagtgctgtttctgtggttaatggcac                                                                                                                                                                                                <  1:604166‑M2/143‑76 (MQ=255)                                                                                                                                                                              agaACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATatggcgcagggtaaggacatcttctcttgcctgcttaatacaggacaacagtgctgtttctgtggtt                                                                                                                                                                                                        <  2:125794‑M2/135‑68 (MQ=255)                                                                                                                                                                                  cTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATatggcgcagggtaaggacatcttctcttgcctgcttaatacaggacaacagtgctgtttctgtggttaatggcactata                                                                                                                                                                                            >  2:604153‑M2/1‑64 (MQ=255)                                                                                                                                                                                  cTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATatggcgcagggtaaggacatcttctcttgcctgcttaatacaggacaacagtgctgtttctgtggttaatg                                                                                                                                                                                                    >  1:125795‑M2/1‑64 (MQ=255)                                                                                                                                                                                     cGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTaaa                                                                                                                                                                    >  1:375536/1‑164 (MQ=255)                                                                                                                                                                                         gtagggCAGTAGTTCGTCACCACGGTTGGAGGGCCAGTGCAGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGca                                                  <  2:729421/270‑1 (MQ=255)                                                                                                                                                                                         ccATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACg                                                                                                                                                                <  2:375529/164‑1 (MQ=255)                                                                                                                                                                                               cAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGAtt                                                                                                            >  2:172610/1‑210 (MQ=255)                                                                                                                                                                                                   aGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGc                                                                                                        <  1:172612/210‑1 (MQ=255)                                                                                                                                                                                                                  ttGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACgt                                            >  2:96196/1‑255 (MQ=255)                                                                                                                                                                                                                    ggAGGGCTATTCCGGTAGTATGCTCAGAATatggcgcagggtaaggacatcttctcttgcctgcttaatacaggacaacagtgctgtttctgtggttaatggcactataccctgtatcactgcattgtcttacagaaactggtgagggctggcataagttgccggtgtttcggtagagtcacggtcatccaccacgcggagtgaataaccgttttcagcggccttattaatcagttcagtgatattaacaccatcaatgtcaacgacaatgtgc                       >  1:267933‑M2/1‑30 (MQ=255)                                                                                                                                                                                                                      aGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTa                                        <  1:96197/255‑1 (MQ=255)                                                                                                                                                                                                                            aTTCCGGCAGTATGCTTAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTaaa                                                                                                                                                                    >  1:541837/1‑125 (MQ=255)                                                                                                                                                                                                                                ctggggTATGCTCAGAATATGGCGCAGATACGCTTCCGGATGGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGACCATGAATCACCCGGGCAt                                                                                                                                   <  1:590584/149‑1 (MQ=255)                                                                                                                                                                                                                                cGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACg                                                                                                                                                                <  2:541826/125‑1 (MQ=255)                                                                                                                                                                                                                                       aTGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATCTCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCATGGCAGTTAATAACAATGGAGTTACAGaa    >  1:13287/1‑274 (MQ=255)                                                                                                                                                                                                                                        tGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACt  >  1:97827/1‑275 (MQ=255)                                                                                                                                                                                                                                             aGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCGGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAAt                                                                                                                                              >  1:209580/1‑130 (MQ=255)                                                                                                                                                                                                                                                 tatGCCGCATATACGCTTCCGGATCGATACCGTTCAGACGGCAGTCGCCTGCTTTTCTGGCAAGCAGCGGGAATCTATACGCTAAAGCAGGAATTAGCGGTCAAGACGCACAACCGGGCCATGAAGCAcc                                                                                                                                          <  2:209578/130‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                          TACTGATAAACCTTCCAGTGGAGGTGCGTTATGGCCGTTTTAACGATTAGCATTGACCTGACAAAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACT  >  CP009273/2071870‑2072375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.