New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2665812	40 (1.000)	5 (0.130)	4/292	NT	11.5%	coding (407/1203 nt)	hcaD	phenylpropionate dioxygenase, ferredoxin reductase subunit
	?	CP009273	= 2665927	39 (1.030)					coding (522/1203 nt)	hcaD	phenylpropionate dioxygenase, ferredoxin reductase subunit

CGACACACGAGAGTTAGTGTTAACCAACGGCGAAAGCTGGCACTGGGATCAGCTTTTTATAGCAACCGGCGCGGCAGCTCGACCGCTGCCGTTGCTTGATGCACTGGGAGAACGCTGCTTTACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAACGCTTCAGGCTGATGTGGTGATTTACGGTATTGGTATCAGCGCCAACGAGCAACTGGCTCGCGAGGCCAACCTTGATACTGCCAATGGCATTGTCATTGATGAGGCTTGCC  >  CP009273/2665663‑2666195                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                             cgACACACGAGAGTTAGTGTTAACCAACGGCGAAAGCTGGCACTGGGATCAGCTTTTTATAGCAACCGGCGCGGCAGCTCGACCGCTGCCGTTGCTTGATGCACTGGGAGAACGCTGCTTTACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGGGGTTGAACTGGCGGCaa                                                                                                                                                                                                                                                                    >  1:209820/1‑275 (MQ=255)              ttAGGGTTAACCAACGGCGAAAGCTGGCACTGGGATCAGCTTTTTATAGCAACCGGCGCGGCAGCTCGACCGCTGCCGTTGCTTGATGCACNGGGAGAACGCTGCTTTACCGTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGCTTGAACTGGCGGCAACCGTCATGGGCCg                                                                                                                                                                                                                                                       <  1:556613/275‑1 (MQ=255)                              gCGAAAGCTGGCACTGGGATCAGCTTTTTATAGCAACCGGCGCGGCAGCTCGCCCGCGTCCGTTGCTTGATGCACGTGGAGAACGCTGCTTTACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTTGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGccc                                                                                                                                                                                                                                       <  1:226144/275‑1 (MQ=255)                                                                         ggCAGCTCGACCGCTGCCGTTGCTTGATGCACTGGGAGAACGCTGCTTTACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAAcc                                                                                                                                                                                                                                                                  >  1:339321/1‑205 (MQ=255)                                                                             gCTCGACCGCTTCCGTTGCTTGATGCCCTGGGAGAACGCTGCTTTACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGANAAGTTCTGNAGCCCGAACGGTTAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACTGCGCCACCAGCAGGCTGGTGTGCGCa                                                                                                                                                                                         <  1:488761/274‑1 (MQ=255)                                                                                         ccGTTGCTTGATGCACTGGGAGAACGCTTCTTTACCCTACGCCATGCCGGTGATGCCTCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTNAGTCGTGATTATCGGTGCCGGAACTAGTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCTCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCaataa                                                                                                                                                                            <  1:569816/275‑1 (MQ=255)                                                                                                       aCTGGGAGAAGGCTGCTTTATCCGCCGCCGTGCCGGGTATGCCGGCAGAGTGCGAGAATTTCTGCAGACCGAACGGTCAGTNTTGATTATNGGTGCCGGAACTATTGGTCGGGAACTGGCGGCCAGCGACACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGTTGTGCGCCTTCTGCTCAATAATGCCATTGAACAt                                                                                                                                                               <  1:476033/274‑1 (MQ=255)                                                                                                                  gctgctTTACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTgg                                                                                                                                                                                                 <  1:398719/229‑1 (MQ=255)                                                                                                                   ctgctTTACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCTAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTg                                                                                                                                                                                    <  1:259888/241‑1 (MQ=255)                                                                                                                    gtataagagacaggCCATGACGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTTTCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACCTGGGGTCGATGGTg                                                                                                                                                  >  1:582425/14‑274 (MQ=255)                                                                                                                       tttACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTgcg                                                                                                                                                                                           >  1:80406/1‑230 (MQ=255)                                                                                                                              tACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCg                                                                                                                                                                                                                                                       >  1:202894/1‑163 (MQ=255)                                                                                                                              tACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGGGTGAGCCTTCTGACCAATAATGACATTGCACATGTGGTCGATGGTNTAAAAgaggaa                                                                                                                                       >  2:63689/1‑270 (MQ=255)                                                                                                                                cGCCATGCCGTTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTCGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTAAAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAAAATGTGGTAGATGGTGAAAAAGTAAAACt                                                                                                                                     >  1:732740/1‑275 (MQ=255)                                                                                                                                  ccATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGa                                                                                                                                   <  1:63690/275‑1 (MQ=255)                                                                                                                                     tGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATgg                                                                                                                                                                                                                                                           >  1:76409/1‑152 (MQ=255)                                                                                                                                         ggTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCTACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCg                                                                                                                                                                                                                                                       <  2:76408/152‑1 (MQ=255)                                                                                                                                                           cGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCAt                                                                                                                                                                                        >  1:235739/1‑197 (MQ=255)                                                                                                                                                               aaGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTg                                                                                                                                                                                    <  2:235737/197‑1 (MQ=255)                                                                                                                                                                 gTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAActggcggcatcaccggcatggcgtagggtaaagcagcgttctcccagtgcatcaagcaacggcagcggtcgagctgccgcgccggttgctataaaaa                                                                                                                                                                             <  1:40084‑M2/202‑98 (MQ=255)                                                                                                                                                                 gTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAActggcggcatcaccggcatggcgtagggtaaagcagcgttctcccagtgcatcaagca                                                                                                                                                                                                                    <  1:91974‑M2/163‑59 (MQ=255)                                                                                                                                                                     tGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAActggcggcatcaccggcatggcgtagggtaaagcagcgttctcccagtgcatcaagcaacggcagcggtcgagctgccgcgccggttgctataaaaagctg                                                                                                                                                                         >  2:40083‑M2/1‑101 (MQ=255)                                                                                                                                                                     tGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAActggcggcatcaccggcatggcgtagggtaaagcagcgttctcccagtgcatcaagcaacgg                                                                                                                                                                                                                >  2:91973‑M2/1‑101 (MQ=255)                                                                                                                                                                     tGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCCCATTCTGCGCAATAATGCCATTGAACATGTGGTCGATGGTGCAAAAGTAGAACAGACGCTGCAAAATGGGGAAACGAGTCAGGCAGAtgtg                                                                                                >  2:654826/1‑275 (MQ=255)                                                                                                                                                                              gaactgcAGTGGTGATTATCGGTGCCGGAACTATTGTTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGTTGTAATGTGACAGTGATTGAACTGGCGGCAACCGTCATTGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTGACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAACGCTTCAGGCTGATGTGGTGATTTa                                                                                        <  2:732726/268‑1 (MQ=255)                                                                                                                                                                              aaCGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTCTACAGCGCCACNAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGAGGAAACGCTTCAGGCTGATGTGGTGATTTAc                                                                                       >  1:668045/1‑275 (MQ=255)                                                                                                                                                                                  gTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAACGCTTCAGGCTGATGTGGTGATTTACGGt                                                                                    <  1:458643/274‑1 (MQ=255)                                                                                                                                                                                  gTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAACGCTTCAGGCTGATGTGGTGATTTACGGTa                                                                                   <  1:132530/275‑1 (MQ=255)                                                                                                                                                                                    cAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCAt                                                                                                                                                                                        >  2:334855/1‑172 (MQ=255)                                                                                                                                                                                        cGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTg                                                                                                                                                                                    <  1:334861/172‑1 (MQ=255)                                                                                                                                                                                            aTTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGc                                                                                                                                                                                                                                   >  1:336688/1‑121 (MQ=255)                                                                                                                                                                                            aTTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGAGACAGTGATTGAACTGGCGGCAACCGACATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCCGGCAGGTGTGCGCATTCTGCTCAATAATGCAATTGAACATGTGGTCGATGGGGAAAAAGTAGAACTGCAGCTGCAAAGGNTGGAAACGCTGGAGGGTGATATTATGATTAACTCTAttttaattt                                                                          >  2:458636/1‑267 (MQ=255)                                                                                                                                                                                                tCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACg                                                                                                                                                                                                                               <  2:336682/121‑1 (MQ=255)                                                                                                                                                                                                                    cTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTgg                                                                                                                      >  1:300736/1‑206 (MQ=255)                                                                                                                                                                                                                        aaCTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGaa                                                                                                                  <  2:300731/206‑1 (MQ=255)                                                                                                                                                                                                                             gCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAActggcggcaaccgtcatggcgtagggtaaagcagcgttctcccagtgcatcaagcaacggcagcggtcgagctgccgcgccggttgctataaaaagctgatcccagtgccagctttcgccgttggttaacactaactctcgtgtgtcgcgacccagcgttttgatggttacaccggaatgca                                                                                        >  1:138555‑M2/1‑45 (MQ=255)                                                                                                                                                                                                                             gCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCGACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAAc                                                                                                                >  2:323709/1‑203 (MQ=255)                                                                                                                                                                                                                                 ccAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCGACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAACGCtt                                                                                                            <  1:323715/203‑1 (MQ=255)                                                                                                                                                                                                                                                 cagATGCAAGGTGACAGTGATTGAACTGCCGGCAACCGTCATGGTCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGt                                                                                                                                                          >  1:539064/1‑141 (MQ=255)                                                                                                                                                                                                                                                     tGTAAGGTGACAGTGACTGAACGGGCGGCAACCGTCATGGGCCATAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGGGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGAt                                                                                                                                                      <  2:539054/141‑1 (MQ=255)                                                                                                                                                                                                                                                         aGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGACCGTGCAACGCTATCTTTTACAGCGCCACcag                                                                                                                                                                                                         >  2:122223/1‑86 (MQ=255)                                                                                                                                                                                                                                                             gACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAgg                                                                                                                                                                                                     <  1:122224/86‑1 (MQ=255)                                                                                                                                                                                                                                                              aCAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGccac                                                                                                                                                                                                            >  1:565951/1‑78 (MQ=255)                                                                                                                                                                                                                                                              aCAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCTCCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAACGCTTCAGGCTGATGTGGTGATTTACGGTATTGGTATCAGCGCCAACGAGCAACTGGCTCGCGAGGCCAACCTTGATACTTCCAATGGCAANGTACTTAATGAgtc       >  2:537218/1‑273 (MQ=255)                                                                                                                                                                                                                                                                  tGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACcagc                                                                                                                                                                                                        <  2:565938/78‑1 (MQ=255)                                                                                                                                                                                                                                                                    aTTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAACGCTTCAGGCTGATGTGGTGATTTACGGTATTGGTATCAGCGCCAACGAGCAACTGGCTCGCGGGGCCAACCTTGATACTGCCAATGGCATTGTCATTGATGAGGCTTGcc  >  1:242240/1‑274 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                             CGACACACGAGAGTTAGTGTTAACCAACGGCGAAAGCTGGCACTGGGATCAGCTTTTTATAGCAACCGGCGCGGCAGCTCGACCGCTGCCGTTGCTTGATGCACTGGGAGAACGCTGCTTTACCCTACGCCATGCCGGTGATGCCGCCAGACTGCGAGAAGTTCTGCAGCCCGAACGGTCAGTCGTGATTATCGGTGCCGGAACTATTGGTCTGGAACTGGCTGCCAGCGCCACGCAGCGCAGATGTAAGGTGACAGTGATTGAACTGGCGGCAACCGTCATGGGCCGTAATGCACCACCGCCCGTGCAACGCTATCTTTTACAGCGCCACCAGCAGGCTGGTGTGCGCATTCTGCTCAATAATGCCATTGAACATGTGGTCGATGGTGAAAAAGTAGAACTGACGCTGCAAAGTGGGGAAACGCTTCAGGCTGATGTGGTGATTTACGGTATTGGTATCAGCGCCAACGAGCAACTGGCTCGCGAGGCCAACCTTGATACTGCCAATGGCATTGTCATTGATGAGGCTTGCC  >  CP009273/2665663‑2666195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.