| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2963082 = | 35 (0.870) | 4 (0.110) | 3/292 | NT | 12.3% | coding (62/690 nt) | mutH | methyl‑directed mismatch repair protein |
| ? | CP009273 | 2963452 = | 24 (0.630) | coding (432/690 nt) | mutH | methyl‑directed mismatch repair protein | |||||
GTGGAACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTGTTCTCGGTCAGGTTGAGCGGATTACCGCTCGTCACGGGGAGTATTTACAGATACGACCGAAAGCAGCGAATGCGAAAGCGCTTACCGAAGCCATTGGTGCCCGGGGCGAACGGATTCTGACGCTGCCACGC > CP009273/2963246‑2963647 | gTGGATATTACAACTATCCCTGTGCCCCGTCTTGGTCGTCCGCGGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCGAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGGTGGCGCAGCGTCGCGTTGTATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAAGGGATATGATTGTtct < 2:508799/275‑1 (MQ=255) gATAGGCTTGGTTGTCAGCGAGAAACAACGTTAGTGTGTGGTGCCCCGTTAGAGGGCAAGAGGGGGGTGACCTGGTAAACGAGCCACGTGCGGCACAAACTCAAACGGGTACTGTGGAGACCGGTTGAAGGCGAGCGAAGCATCCCGCTGGCGCAGAGTGGAGTTGGATCACCGTTGCTGTGGAGCCAGGATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTGTTCTCGGTCAGGTTGAGCGGATTACCg < 2:239568/274‑1 (MQ=255) cctcTGGAAACAACATTCGCTTGTGTTGCCCCGTTAACGGGCAATAGCGAGGCGACCTGGGATACCAGCCACGTGCGCCACAAACTCAAACACGTACTGCGGATACCGGTTGAAGCCGAGCGCAGCATCCCGCTGGCGCAGCGACGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTGTGATCGGTCAGGTTGAACTGATTACCGCACTTCaatttgtgt > 2:517589/4‑266 (MQ=255) ccGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGAc > 2:719548/1‑207 (MQ=255) cacgcccagagcagcaaaatcttgctcaggtttactccctgcgctggcacctagccagatctccagtaacacgccaatccagcctttatcgcgttttaaattctctggcgtaaccagcccgacaagtgccgccagttctcccaatgtataaccagaaagttgctgtgGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTg > 1:162880‑M2/168‑232 (MQ=255) tGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTggg < 1:719562/207‑1 (MQ=255) cccagagcagcaaaatcttgctcaggtttactccctgcgctggcacctagccagatctccagtaacacgccaatccagcctttatcgcgttttaaattctctggcgtaaccagcccgacaagtgccgccagttctcccaatgtataaccagaaagttgctgtgGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTGTtct < 2:162878‑M2/69‑1 (MQ=255) ggcctttCTGTGGCGCCGTTACCCAGCCATGGCGGCGTGGGCTGGGACACCTGCCACGTGCGGCACAACCTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCAGCCCGGTGGTGCAGCGTCGCGTTGGGTCACCGTTGCTGTGGAGCCCGAATGAAGTGGAAGACCGGCAGCTACGCGACGACTGCGAAGAATTAATGGATATGATTGTTCTCGGTCAGGTTGAGCGGAGTACCGCTCGTCACGGGGAGTATTTACAGATACGGcc < 2:327730/271‑1 (MQ=255) gTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGACTGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTaa > 2:506584/1‑202 (MQ=255) gtgtTGCCCCGTTAACGGNCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCACCTACGCGAAGACTAGGAAGAATTAATGGa < 1:506593/202‑1 (MQ=255) tgcgctggcacctagccagatctccagcaacacgccaatccagcctttatcgcgttttaaattctctggcgtaaccagcccgacaagtgccgccagttctcccaatgtataaccagaaagttgctgtgGATCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTg > 1:420861‑M2/129‑193 (MQ=255) ctggcacatagacagatctccagtaacacgccaatccagcctttatcgcgttttaaattctctggcgtaaccagcccgacaagtgccgccagttctcccaatgtatagccagaaagttgctgtgGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTGTtct < 2:420854‑M2/69‑1 (MQ=255) aaCGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTGTTCTCGGTCAGGTTGAGCGGATTACCGCTCGTCACGGGGAGTATTTACAGATACGACCGAAAGCAGAGAATGCGAAAGCGCTTACCGAAGCCATTGGTTCCCGGTTCGAACGGAGTNTTAGGCTGCCAcca > 2:530001/1‑273 (MQ=255) aCTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGAc > 2:166542/1‑112 (MQ=255) aCTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAAt > 2:179619/1‑122 (MQ=255) gtgGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAg < 1:216426/72‑1 (MQ=255) tgGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTggg < 1:166544/112‑1 (MQ=255) tgGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAAt < 1:179621/122‑1 (MQ=255) tgGATACAGGTTGAAGGCGAGGGGAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTGTTCTCGGTCAGGTTGAGCGGATTACCGCTCGTCACGGGGAGTATTTACAGNTACGACCGAAag > 1:502679/1‑196 (MQ=255) aCCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACt > 1:356505/1‑104 (MQ=255) ggTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAAt > 2:100541/1‑110 (MQ=255) ggTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGat > 2:465591/1‑118 (MQ=255) gTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGga < 2:356499/104‑1 (MQ=255) gAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGaa > 2:393592/1‑69 (MQ=255) gAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAAt < 1:100542/110‑1 (MQ=255) gAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGa < 1:465598/118‑1 (MQ=255) gCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAgg < 1:393599/69‑1 (MQ=255) cGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGat > 1:605051/1‑95 (MQ=255) ggCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGa < 2:605038/95‑1 (MQ=255) | GTGGAACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTGGATCACCGTTGCTGTGGAGCCCGAATGAAGAGGAAGACCGGCAGCTACGCGAAGACTGGGAAGAATTAATGGATATGATTGTTCTCGGTCAGGTTGAGCGGATTACCGCTCGTCACGGGGAGTATTTACAGATACGACCGAAAGCAGCGAATGCGAAAGCGCTTACCGAAGCCATTGGTGCCCGGGGCGAACGGATTCTGACGCTGCCACGC > CP009273/2963246‑2963647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |