New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 3145831 | 25 (0.620) | 4 (0.110) | 4/294 | NT | 13.6% | coding (237/1188 nt) | metC | cystathionine beta‑lyase, PLP‑dependent |
? | CP009273 | = 3146357 | 27 (0.710) | coding (763/1188 nt) | metC | cystathionine beta‑lyase, PLP‑dependent |
GTTCCGGCGATTGTTGCCGCCGTACGCAGTGTGGTGCCGGATGCCATCATTATGATCGACAACACCTGGGCAGCCGGTGTGCTGTTTAAGGCGCTGGATTTTGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGAAAAAACTCAATAATGAAGAGCTGGCGAACTATCTGGATAACTTCAGTTTATTCAGCATGGCCTACTCGTGGGGCGGGTATG > CP009273/3146090‑3146624 | gggtcgggggttggtgCCGCCCTGCGCTGGGTGGTGCCGGTTGCCATCATTATGCTCGACCGCTCCTGGGCAGCCGGGGTGCTGTTTAGGGCTCTGGAGTGTGGCAGCGATGTTTCTCTTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTgcg < 2:51244/265‑1 (MQ=255) catcatTATGATCGACAACACCTGGGCAGCCGGTGTGCTGTTTAAGGCGCTGGATTTTGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGNCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGa > 1:574221/1‑275 (MQ=255) catcatTATGATCGACAACACCTGGGCAGCCGGTGTGCTGTTTAAGGCGCTGGATTTTGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGa > 1:94843/1‑275 (MQ=255) tGGATTTTGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCGGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGAGGCCGATACCGCATATATAACAAGCCGTGGCCTGGGCACATAAGGTGTGCGTTTGGGGCAACATCATGAAAGCAGCCTGAAAGGGGCAGAAGGGGTGGCAGGAACGCCGCAAGTTGCGCGGGTaaattt > 2:193806/1‑271 (MQ=255) tGGATTTTGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGa > 2:213203/1‑214 (MQ=255) tGGATTTTGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCAGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAacca > 1:450981/1‑274 (MQ=255) ttttGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGc < 1:213205/214‑1 (MQ=255) ttGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGgcctgcgccaccttccagttcacacatcgcttgttgtaaggagaaatgggttaacgttccgcgccgtccatagaacaactctccattggcgcgattacgtgtcgcg > 1:339258‑M2/1‑168 (MQ=255) tGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGgcctgcgccaccttccagttcacacatcgcttgttgtaaggagaaatgggtgaacgttccgcgacgtccatagacacaatatccagaggcgcggttacgtgtcggggg < 2:339252‑M2/275‑109 (MQ=255) gccACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAAtt > 1:66576/1‑275 (MQ=255) caccaAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGg < 2:108240‑M2/141‑2 (MQ=255) caccaAATATCTGGTAGGGCAGTCAGATAAGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGgcc < 1:509044‑M2/143‑4 (MQ=255) aactatCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTgcg < 2:509035/140‑1 (MQ=255) aaaTATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGgcctg > 1:108241‑M2/1‑136 (MQ=255) gCACTGCCGTGTGCAATGCCCGTTGGTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTTGCTGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCAGGAAAGCAGTCTGNAAGTGGCTGAATGGCTGGCAGAACATACGCAAGTTGCGCGAGGTAACCACCCTGCTCTGCATGGCCGTAAAGGTCACGAACTATGGAAACGAGACTTTACAGGCAGCAGCGGGCGATTTTcc > 1:623444/1‑275 (MQ=255) tgCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGg < 2:387661‑M2/92‑2 (MQ=255) aTGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGgcctg > 1:387668‑M2/1‑87 (MQ=255) tGCGCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCGCAtt > 2:87749/1‑99 (MQ=255) tGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACAtt > 2:118810/1‑99 (MQ=255) cGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGgt < 1:118811/99‑1 (MQ=255) cGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGgt < 1:87750/99‑1 (MQ=255) gTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGg < 2:243704‑M2/82‑2 (MQ=255) cTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGgcctg > 1:243707‑M2/1‑77 (MQ=255) aTCTGATGGGCCAGATGGACGATGCCGATACCGCCTATATAACCAGCCGTGgcctgcgccaccttctagttcacacatcgcttggtggaaggagaaatgggttaacgttccgcgccgtccagagaacaactctccaatggcgcgattacgtgtc < 2:440441‑M2/154‑104 (MQ=255) gATGGGCCAGATGGTCGATTCCGATACCGCCTATATAACCAGCCGTGgcctgcgccccgttccagtgcacacatcgcttgttgtaaggagaaatgggttaccgttccgcgccgtccatagaacaactctccattggcgcgattacgtgtcgcgt > 1:440448‑M2/1‑47 (MQ=255) aTGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTAttt > 2:165344/1‑216 (MQ=255) gggCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATg > 2:39547/1‑83 (MQ=255) gCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCt < 1:165346/216‑1 (MQ=255) gCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGaaaa > 1:280687/1‑231 (MQ=255) caaagctGGTCGATGCCCATTCCGCCCCTCCTACCTGCCGTGGCCTGCGCACATTGCGTGTGCGTTTGCGGCAACAGCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACAGCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAAGTCACGAATTCTGGAAACGGGACGTTACAGGCAGCGGCGGGCTATGATCCTTTGTACTTAAGGAAGAACTCAATAATGAGGAGCTGGCGAGCTATCTGGATAACTTCAGt < 2:623430/269‑1 (MQ=255) cAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAg < 1:39548/83‑1 (MQ=255) gATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGAAAAAACt < 2:280682/231‑1 (MQ=255) tCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAAAATCCGCAAGTTGcgcg > 1:256588/1‑124 (MQ=255) tGCCGATTCCGCCTATATAACCAGCCGTGGCCTGCGGACATTAGGTGGGCGTTTTCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAAGGGCTGGCAGAACATCCGCAAGTTGCGCGTGtt < 2:256585/124‑1 (MQ=255) cGATACCGCCTATATAACCAGACGTGGCCTGCGCACCTTATGTGTGCGTTTGCGGCAACATCATGAAAGCAGGCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATGTTCCTTTGTGCTTAAGAAAAAACTCAATAATGAAGAGCTGGCGAACTATCTGGATAACTTCAGTTTATTCAGCATGGcc < 1:193808/274‑1 (MQ=255) tatagtgcatagttaACCAGCCGTGGCCTGCGCACTGTAGGTGGGCGTTTGCGTCAACATAATGAAAGTAGTCGTAGAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACCAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGAAAAAACTCAATAATGAAGAGCTGGCGAACTATCTGGATAACTTCAGTTTATTCAGCATGGcc < 2:516962/260‑1 (MQ=255) tataACCAGCCGTGGACTGCGCACATTAGGAGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTNTCCTTTGTGCTTAAGAAACAACTCAATAATGAAGAGCTGGCGAACTATCTGGATAACTTCAGTTTATTCAGCATGGCCTACTCGTTGGGc > 1:516971/1‑274 (MQ=255) ccAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGc > 2:24322/1‑120 (MQ=255) ccAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGAAAAAACTCaataat > 1:73903/1‑209 (MQ=255) aGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCtt > 2:350783/1‑189 (MQ=255) aGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGAAAAAACTCAATAATGAAGAGCTGGCGAACTATCTGGATAACTTCAGTTTATTCAGCATGGCCTACTCGTGGGGCGGGTATg > 1:97711/1‑274 (MQ=255) gCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGcagcag > 1:269290/1‑166 (MQ=255) ccGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTgg < 1:24323/120‑1 (MQ=255) ccGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGAAAAAACTCAATAATGAag < 2:73902/209‑1 (MQ=255) gTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGa < 1:350789/189‑1 (MQ=255) tGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCggg < 2:269286/166‑1 (MQ=255) | GTTCCGGCGATTGTTGCCGCCGTACGCAGTGTGGTGCCGGATGCCATCATTATGATCGACAACACCTGGGCAGCCGGTGTGCTGTTTAAGGCGCTGGATTTTGGCATCGATGTTTCTATTCAAGCCGCCACCAAATATCTGGTTGGGCATTCAGATGCGATGATTGGCACTGCCGTGTGCAATGCCCGTTGCTGGGAGCAGCTACGGGAAAATGCCTATCTGATGGGCCAGATGGTCGATGCCGATACCGCCTATATAACCAGCCGTGGCCTGCGCACATTAGGTGTGCGTTTGCGTCAACATCATGAAAGCAGTCTGAAAGTGGCTGAATGGCTGGCAGAACATCCGCAAGTTGCGCGAGTTAACCACCCTGCTCTGCCTGGCAGTAAAGGTCACGAATTCTGGAAACGAGACTTTACAGGCAGCAGCGGGCTATTTTCCTTTGTGCTTAAGAAAAAACTCAATAATGAAGAGCTGGCGAACTATCTGGATAACTTCAGTTTATTCAGCATGGCCTACTCGTGGGGCGGGTATG > CP009273/3146090‑3146624 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |