New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	421765 =	49 (1.220)	5 (0.130)	3/294	NT	11.6%	coding (173/1128 nt)	tgt	tRNA‑guanine transglycosylase
	?	CP009273	421843 =	30 (0.790)					coding (251/1128 nt)	tgt	tRNA‑guanine transglycosylase

GTAGTGGAGAAAAAATGAAATTTGAACTGGACACCACCGACGGTCGCGCACGCCGTGGCCGCCTGGTCTTTGATCGTGGCGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTACGATCTTGGTTCGGATATCGTCATGATCTTTGATGAGTGTACGCCGTATCCTGCTGACTGGGATTACGCAAA  >  CP009273/421579‑422059                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                         gTAGTGGAGAAAAAATGAAATTTGAACTGGACACCACCGACGGTCGCGCACGCCGTGGCCGCCTGGTCTTTGATCGTGGCGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGACCGATCCt                                                                                                                                                                                                                 >  1:455609/1‑274 (MQ=255) gTAGTGGAGAAAAAAAGAAATGTGGACTGTACACCACCGACGGTCGCGCACGCCGTGGCCGCCTGGTCTTTGATCGTGGCGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCAACGTAAAAGGGATGACGCCGGCAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCANCACCTTCCACCTGTGGCAGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGACGGGGCCGATCCt                                                                                                                                                                                                                 >  1:503618/1‑274 (MQ=255)                     tttGAACTGGACACCACCGACGGTCGCGCACGCCGTTGAGGCGTGTTTTTTGATCGGGGCGTGGTGGAAACGCCTTGTTTTGTGCCTGTTGTGCCGTAGAGCACCGTAAAAGGGATGACGCCGGGAGAAGTTGAAGCCGCTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTcc                                                                                                                                                                                             <  2:718800/274‑1 (MQ=255)                      ttGTACTGGACACCACCGACGGTCGCGCACGCCGTGGCCGCCTGGTCTTTGATCGTGGCGTAGTGGAAACGCCTTTTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCTGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCa                                                                                                                                                                                            <  1:650059/274‑1 (MQ=255)                                     ccGTCGGTCGCGCACGCCGTGGCCGCCTGGTCTTTGATCGTGGCGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACGGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTgg                                                                                                                                                                             <  1:604345/274‑1 (MQ=255)                                                  cggcagTGGCGGCCTGGTCTGTGATCGGGGCGTAATGGAAACGCCTTGTTTTATGCCTGTTGGCAGCTACGGCACCGTAAAAGGGATGACGACGGAAGAAGTTGAAGCCACGGGCGCGCAAATTATCCGCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTaaaa                                                                                                                                                               <  2:245939/270‑1 (MQ=255)                                                           cagacTGGTNGTTGGTAGGGGGGTATTGGAAACTCCTTGTTTTATGCTTGTTGGCACCTACGGCACTGGAAAAGGGATGCCGCCGGAAGAAGTTGAAGCCACTGGGGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCGCGGGCCAGGAAATCATGACACTGCACGGCGTTCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAAc                                                                                                                                                      <  2:288250/271‑1 (MQ=255)                                                                  gTCTTTTATCGTGGCGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGCCGAACTGCACGCTATTATGCAGCGGAAGGGGCCGATCCCCACCGACCACGGCGGCTTCACGGTCTCCCGCCTTGGCGAAANTCTTAAACTcccccacccctact                                                                                                                                                >  2:433591/1‑264 (MQ=255)                                                                     tttGATCGTGGGGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCGGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCa                                                                                                                                            <  1:331112/275‑1 (MQ=255)                                                                       tGATCGGGGGGTAGTGGAAACGCCTGGTTTTATGCCTGTTGGCACCGACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCAc                                                                                                                                           <  1:433598/274‑1 (MQ=255)                                                                            gTGGCGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTACGCCTTGGCGATATTCGTAAAATCACCGAACAGTTTGTGCCCTTccc                                                                                                                                      >  2:617938/1‑273 (MQ=255)                                                                             tGGCGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAgg                                                                                                                                                                                          >  2:90958/1‑221 (MQ=255)                                                                                 gTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCtt                                                                                                                                                                                      <  1:90959/221‑1 (MQ=255)                                                                                               ttGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCCCCGACTCCggcggc                                                                                                                                                                                                 >  2:599771/1‑196 (MQ=255)                                                                                                   tttATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTcc                                                                                                                                                                                             <  1:599784/196‑1 (MQ=255)                                                                                                      aTGCCTGTTGGCACCTACGGCACCGTAAAAGCGATGACGCCGGAAGATGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTCCCAGGTCTTCAGCCtt                                                                                                                                                                               >  2:79764/1‑207 (MQ=255)                                                                                                            gTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACa                                                                                                                                                     >  2:570265/1‑227 (MQ=255)                                                                                                             ttGGCACCTACGGCTCCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGNACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGAt                                                                                                    <  1:617951/275‑1 (MQ=255)                                                                                                                gCACCTACGGCACCGTAAAAGGGATGANGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTACAGGTATTCAGCCGTGGCGATATTCGTaa                                                                                                                                                                 <  1:513101/211‑1 (MQ=255)                                                                                                                gCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGc                                                                                                                                                 <  1:570278/227‑1 (MQ=255)                                                                                                                               tAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCATCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGgag                                                                                  >  1:640682/1‑275 (MQ=255)                                                                                                                                       aTGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGATGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTgg                                                                                                                                                                             >  2:448817/1‑176 (MQ=255)                                                                                                                                       aTGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGAATCCGGCGGCTTNCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCg                                                                                                                                      >  1:664211/1‑215 (MQ=255)                                                                                                                                           cGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGat                                                                                                                                                                         <  1:448824/176‑1 (MQ=255)                                                                                                                                                                               tCCTCGGCAACCCCTTCCACCTGGGGCTGCGCCCGGGCCAGGAAATCATGGAACTGCACGGCGCTCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTACGATCTTGGTTCGGATATCGTCATGATCTTTGATGAgtgt                                  <  1:6313/275‑1 (MQ=255)                                                                                                                                                                                                      tgGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTATTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCATTTCCGCAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTACGATCTTGGTTCGGATATCGTCATGATCTTTGATGAGTGTACGCAGTATCCTGCTGACCggg            >  1:660379/1‑274 (MQ=255)                                                                                                                                                                                                               tgcagatcgccgtgcagtttcatgatttcctggcccgggcgcagccacaggtggaaggGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTaa                                                                                                                                                                 >  2:77902‑M2/59‑116 (MQ=255)                                                                                                                                                                                                               tgcagatcgccgtgcagtttcatgatttcctggcccgggcgcagccacaggtggaaggGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTACAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACTGCGATCCGATTTTCCTCGACGCTGAAAAATCAATGGCGATTAATTACGATCTTGGTTCGGATATCGTCATGATCTTTAATGAGTGTACGCCATATCCGGCTGACAGGTATTACGCaaa  >  1:394724‑M2/59‑275 (MQ=255)                                                                                                                                                                                                               tgcagatcgccgtgcagtttcatgatttcctggcccgggcgcagccacaggtggaaggGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTACGATCTTGGTTCGGATATCGTc                                                    >  2:187117‑M2/59‑225 (MQ=255)                                                                                                                                                                                                                   gatcgccgtgcagtttcatgatttcctggcccgggcgcagccacaggtggaaggGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATc                                                                                                                                                             <  1:77903‑M2/62‑1 (MQ=255)                                                                                                                                                                                                                   gatcgccgtgcagtttcatgatttcctggcccgggcgcagccacaggtggaaggGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTACGATCTTGGTTCGGATATCGTCATGa                                                <  1:187119‑M2/171‑1 (MQ=255)                                                                                                                                                                                                                             cATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCGGATCCTCACCGACTCCGGCGGCTTCCAgg                                                                                                                                                                                          >  2:506751/1‑77 (MQ=255)                                                                                                                                                                                                                                 aaaCTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCATCATTGACTCCGTCGGCTTCCAGGTCtt                                                                                                                                                                                      <  1:506760/77‑1 (MQ=255)                                                                                                                                                                                                                                       cACGTCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTAc                                                                         >  2:195459/1‑180 (MQ=255)                                                                                                                                                                                                                                           tcGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTACGATc                                                                     <  1:195461/179‑1 (MQ=255)                                                                                                                                                                                                                                                              gCAGTGGTAGGTGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTTGCGATATTCGCAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTACGATCTTGGTTCgg                                                            <  1:406396/170‑1 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                         GTAGTGGAGAAAAAATGAAATTTGAACTGGACACCACCGACGGTCGCGCACGCCGTGGCCGCCTGGTCTTTGATCGTGGCGTAGTGGAAACGCCTTGTTTTATGCCTGTTGGCACCTACGGCACCGTAAAAGGGATGACGCCGGAAGAAGTTGAAGCCACTGGCGCGCAAATTATCCTCGGCAACACCTTCCACCTGTGGCTGCGCCCGGGCCAGGAAATCATGAAACTGCACGGCGATCTGCACGATTTTATGCAGTGGAAGGGGCCGATCCTCACCGACTCCGGCGGCTTCCAGGTCTTCAGCCTTGGCGATATTCGTAAAATCACCGAACAGGGCGTGCACTTCCGTAACCCGATCAACGGCGATCCGATTTTCCTCGATCCTGAAAAATCAATGGAGATTCAGTACGATCTTGGTTCGGATATCGTCATGATCTTTGATGAGTGTACGCCGTATCCTGCTGACTGGGATTACGCAAA  >  CP009273/421579‑422059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.