New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	703315 =	11 (0.270)	4 (0.110)	3/294	NT	13.7%	noncoding (90/165 nt)	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	CP009273	3505933 =	40 (1.050)					noncoding (64/90 nt)	REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences

CGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAATTTGAAGATAAGGCGCAACAGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATTCAGTCAGCATACCGGAAACGGCATCAGCCACTTCACCTTTCAGATGACCATACATCTTGCCTTCGA  >  CP009273/3505662‑3506204                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                agtactgaCGGCGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTATATTGAATATTTATAGATTAAGGAATTTGAAGATAAGGCGCAACAGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGAt                                                                                                                                                                                                                                                                              <  2:154038/270‑1 (MQ=255)                                                                      atatagtaaagAATTTGAAGATAAGACGCAACAGAGAGATGTGGAAACGGCGGTGCAATTCCCATTTTTTCGGAGTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAATATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCAGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTc                                                                                                                                                                                                            <  2:320844/262‑1 (MQ=39)                                                                         tCTTCAGGAATTTGAAGATAAGGCGCAACAGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca                                                                                                                                                                                                      <  1:106816/275‑1 (MQ=255)                                                                              aGGACTTTGAAGATAAGGCGCAACAGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCACTATGTGCATTACTTTTTAGGCCGGATAAGGCGTTCACGCCGCATACGGCATGAAAAAAGCGCACTTTGCCAGACATAGTGAATAACGGCCACACCACAAAAc                                                                                                                                                                                                  >  1:368184/1‑274 (MQ=255)                                                                                              ggCGCAACAGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACg                                                                                                                                                                                                                 >  2:544428/1‑243 (MQ=255)                                                                                                  cAACAGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTACCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCtt                                                                                                                                                                                                             <  1:544439/243‑1 (MQ=255)                                                                                                    aCAGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGAAATTTGCAAGCAATAGTGAATTACGGc                                                                                                                                                                                                               >  2:213469/1‑239 (MQ=255)                                                                                                        cGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCg                                                                                                                                                                                                           <  1:213471/239‑1 (MQ=255)                                                                                                                       gCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCt                                                                                                                                                                                          <  2:98344/241‑1 (MQ=255)                                                                                                                       gCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACAAATCGCt                                                                                                                                                                                          >  1:98345/1‑241 (MQ=255)                                                                                                                                                        aaTGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCAAAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCt                                                                                                                       >  1:277900/1‑275 (MQ=255)                                                                                                                                                         atgatgtgaaaaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTTCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCGTTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTg                                                                                                                      <  1:450113/267‑1 (MQ=255)                                                                                                                                                                        ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCtttt                                                                                                                                                                           >  1:625323/1‑207 (MQ=255)                                                                                                                                                                            gTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCg                                                                                                                                                                       <  2:625309/207‑1 (MQ=255)                                                                                                                                                                                                        aGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                                                                                                                                                >  1:305800/1‑90 (MQ=255)                                                                                                                                                                                                        aGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTc                                                                                                                                                                                        >  2:435540/1‑162 (MQ=255)                                                                                                                                                                                                        aGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGAGATAGCGCTCCTGCa                                                                       >  1:92322/1‑275 (MQ=255)                                                                                                                                                                                                            atgatgccgntggcgcTACGCTTATGAGGCTTACTTGCTCGTGCAATATGTGCATTCCTTTGTAGGCCGGATAAGGCGTGCACGCCGCATCCGGCATGAACAAAGCGAAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATtc                                                                   <  2:277895/263‑1 (MQ=255)                                                                                                                                                                                                            aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                                                                                                                                                                                                                            <  2:305795/90‑1 (MQ=255)                                                                                                                                                                                                            aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTac                                                                                                                                                                                    <  1:435547/162‑1 (MQ=255)                                                                                                                                                                                                             atttGTCTGATGCGCTACTCTTATCAGTCCTTCATTTCTTTGCAATATGTGCATTACTGTGTAGGCCGGATAAGGCGTTCACTCCGCTTCCGGCATGAACAAAGCGCAATTTGCCCGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATtca                                                                  <  1:155489/273‑1 (MQ=255)                                                                                                                                                                                                                     gATGCGCTACGCTTATCAGGCCTACATTACCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGNTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGTCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATTCAGTCAGCa                                                           >  1:520153/1‑274 (MQ=255)                                                                                                                                                                                                                           cTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgcg                                                                                                                                                                                                                                           >  2:77447/1‑92 (MQ=255)                                                                                                                                                                                                                           cTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGATGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATa                                                                                  >  1:414192/1‑245 (MQ=255)                                                                                                                                                                                                                               gCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAt                                                                                                                                                                                                                                       <  1:77448/92‑1 (MQ=255)                                                                                                                                                                                                                                        gCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc                                                                                                                                                                                                 >  2:711756/1‑121 (MQ=255)                                                                                                                                                                                                                                            atttttctatgtaaTATGTGCATTACGTGTTGGGCCGGATAAGGCGTTCACGCAGCATCCGTCATGAACAAACCGCAATTTGCCAGAAATAGTGAATTACGGCTTCGCCACCAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAATCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATTCAGTCAGCATACCGGAAACGGCATCAGCCACtt                                   <  2:92321/263‑1 (MQ=255)                                                                                                                                                                                                                                            aCATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGGGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATc                                                                                                                                                                                             <  1:711770/121‑1 (MQ=255)                                                                                                                                                                                                                                             cATTTCCTTGCAATATGTGCATTACTCTGTAGTCCGGATAATGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCACTAGTGAATTACGGCTTCGCCACAACACCAATCGCTTCGTACACCGCTTTTATCGTACGGGAAGCGTTCGCGCt                                                                                                                                                    >  2:689242/1‑161 (MQ=38)                                                                                                                                                                                                                                             cATTTACTTGGAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACACAACCAATCGCTTCGCACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTGTCCGCGCCATCTTTCATCACCTGATGCAGGCAGGCTTCATCGTTGAGGAAACGGTGATAGCGGTCCTGCAAATCAGTCAGCATaacggcaacggcccacgccaggg                                   >  2:193692/1‑263 (MQ=255)                                                                                                                                                                                                                                               caaattcaatatattgcagagatcatgtaggccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAtttt                                                                                                                                                                                                                                     >  2:696445‑M2/34‑78 (MQ=255)                                                                                                                                                                                                                                               caaactcaatatattgcagagatcatgtaggccGGATAAGGCGTTCAcgccg                                                                                                                                                                                                                                                               >  1:331078‑M2/34‑52 (MQ=255)                                                                                                                                                                                                                                                 tCCTTGCACTATGTGCATTACTTGGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGGACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAGTCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCt                                                                                                                                                <  1:689256/161‑1 (MQ=255)                                                                                                                                                                                                                                                   ttcaatatattgcagagatcatgtaggccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCATTTTGTCa                                                                                                                                                                                                                                 <  1:696459‑M2/49‑1 (MQ=255)                                                                                                                                                                                                                                                   ctcaatatattgcagagatcatgtaggccGGATAAGGCGTTCACGCCGCATc                                                                                                                                                                                                                                                           <  2:331072‑M2/23‑1 (MQ=255)                                                                                                                                                                                                                                                    ttGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGc                                                                                                                  >  1:318929/1‑188 (MQ=255)                                                                                                                                                                                                                                                       caaaaggtgCATTACTTTGTAGGCAGAATAAGGCGTTCACGCCGCATCCGGCAAGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATTCAGTCAGCATACCGGAAACGGCATCAGCCACTTCACCTTTCAGa                        <  2:17150/269‑1 (MQ=255)                                                                                                                                                                                                                                                        aaTATGTGCATTACTTTGTAGGCCGGATAATGCGTTCACGTCGCATCCGGCATGAACAAAGCTCAAGTGGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATTCAGTCAGCATACCGGAAACGGCATCAGCCACTTCACCTTTCAGAt                       <  1:193694/275‑1 (MQ=255)                                                                                                                                                                                                                                                        aaTATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATTCAGTCAGCATACCGGAAACGGCATCAGCCACTTCACCTTTCAGAt                       <  1:83288/275‑1 (MQ=255)                                                                                                                                                                                                                                                        aaTATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGa                                                                                                              <  2:318923/188‑1 (MQ=255)                                                                                                                                                                                                                                                          tatGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAtt                                                                                                                                                                                                                                      >  2:9141/1‑66 (MQ=255)                                                                                                                                                                                                                                                             gtgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTTCGGAAACGGTGCTAGCGTTCCTGCAATTCAGTCAGCATACCGGAAACGGCCTCAGCCCATTCACCCTTCAGactact                   >  2:119665/1‑269 (MQ=255)                                                                                                                                                                                                                                                              tgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGcc                                                                                                                                                                                                                                  <  1:9141/66‑1 (MQ=255)                                                                                                                                                                                                                                                              tgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCg                                                                                                                                                                                       >  1:471026/1‑109 (MQ=255)                                                                                                                                                                                                                                                                  ttACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTaca                                                                                                                                                                                   <  2:471018/109‑1 (MQ=255)                                                                                                                                                                                                                                                                        tgtaggccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAtt                                                                                                                                                                                                                                      >  1:47690‑M2/9‑52 (MQ=255)                                                                                                                                                                                                                                                                        tgtaggccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACaaaa                                                                                                                                                                                                   >  1:118630‑M2/9‑87 (MQ=255)                                                                                                                                                                                                                                                                        tgtaggccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCACTTCAGTCAGCATACCGGAAACGGCATCAGCCACTTCACCTTTCAGATGACCATACatctgtc        >  1:17150‑M2/9‑271 (MQ=255)                                                                                                                                                                                                                                                                            ggccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGcc                                                                                                                                                                                                                                  <  2:47689‑M2/48‑1 (MQ=255)                                                                                                                                                                                                                                                                            ggccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCaa                                                                                                                                                                                               <  2:118629‑M2/83‑1 (MQ=255)                                                                                                                                                                                                                                                                             gccGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                                                                                                                                                                                                                 >  2:630318‑M2/4‑36 (MQ=255)                                                                                                                                                                                                                                                                               cGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCCCCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATtcagtc                                                               >  2:722115‑M2/2‑212 (MQ=255)                                                                                                                                                                                                                                                                               cGGATAAGGCATTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTCCGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGTCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCATTCCTGCACTTCAGTCAGCATACCGGAAACGGCATCACGCACTTCACCTTTCAGATGACCATACATCTTTCCTTCGa  >  1:733528‑M2/2‑273 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                CGTGATGACGACGCCTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAATTTGAAGATAAGGCGCAACAGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCATCTTTCATCACCTGTTGCAGGAAGGCTTCATCGTTGCGGAAACGGTGATAGCGTTCCTGCAATTCAGTCAGCATACCGGAAACGGCATCAGCCACTTCACCTTTCAGATGACCATACATCTTGCCTTCGA  >  CP009273/3505662‑3506204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.