New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 70717443 (1.070)5 (0.130) 4/302 NT 12.5% coding (181/294 nt) ybfE LexA‑regulated protein, CopB family
?CP009273 = 707471 28 (0.720)intergenic (‑117/+23) ybfE/ybfF LexA‑regulated protein, CopB family/acyl‑CoA esterase

AGGCCACGTACTTTGTCGCGTTTTAGCTGGTTGCGTTTATTAATACGCAGCTGTTCATCGCGCGAAAGCGGATTAGTTTTCGGTCGTCCCGGTCGACGCTCGTGCGCGAACAGATCTAATGTCGTACGGTCCGTTTGTTCTTTGGCCATGATCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATTGCCGCCAGGGATAAACAGGGCAGGGTGATCCCATGCCGGGATTTTCTCCCAACCTACAATATGCGGATAC  >  CP009273/707206‑707716
                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                     
aGGCTACGTACTTTTTCGCGTTTTGGCTTGTTGCGTTTATTAATACGCAGCTGTTCATCGCGCGAAAGCGGATTAGTTTTCGGTCGTCCCGGTCGACGCTCGTGCGCGAACAGATCTAATGTCGTACGGTCCGTTTGTTCTTTGGCCATGATCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGttt                                                                                                                                                                                                                                              <  1:226833/275‑1 (MQ=255)
            tgggggcgTTTTGGCTGTGTGCGGTTCTGAATACGCAGCTTTTCATCGTGCGAAAGGGGATTAGTTTTCGGTCGTCCCGGTCGACGCTCGTGCGCGAAGAGATCTAATGTCGTACGGTCCGTTTGTTCTTTGGCCATGATATTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGc                                                                                                                                                                                                                                  <  2:164598/270‑1 (MQ=255)
               tCGCGTTTTAGCTGGTTGCGTATAGTAAGCCGCAGCTGTTCATCGCGCGAAAGCGGATTAGTTTTCGGTCGTCCCGGTCGACGCTCGTGCGCGAACAGATCTAATGTCGTACGGTCCGTTTGTTCTTTTGCCATGATCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGNATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTGCTTAATCAGTGGCGtt                                                                                                                                                                                                                               >  1:518724/1‑275 (MQ=255)
                          cTGGTTGCGTTTATTAATACGCAGCTGTTCATCGCGCGAAAGCGGATTAGTTTTCGGTCGTCCCGGTCGACGCTCGTGCGCGAACAGATCTAATGTCGTACGGTCCGTTTGTTCTTTGGCCATGCACTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTgaga                                                                                                                                                                                                                    <  1:594860/275‑1 (MQ=255)
                                    tttttaATGCGCAGCTGTTCATCGCGCGAAAGCGGATTATTTTTCGGTCGTCCCGGTCGACGCTCGTGCGCGAACAGATCTAATGTCGTACGGTCCGTTTGTTCTTTGGCCATGATCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGa                                                                                                                                                                                                          <  1:17218/272‑1 (MQ=255)
                                                    gTTCATCGCGCGAAAGCGGATTAGTTTTCGGTCGTCCCGGTCGACGCTCGTGCGCGAACAGATCTCATGTCGTACGGTCCGTTTGTTCTTTGGCCATGATCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACgctg                                                                                                                                                                                                                                                   >  1:697609‑M2/1‑214 (MQ=255)
                                                                           tttttCGGTCGTCCCGTGCGTCGCTCGTGCGCGAACAGATCTAATGTCGTACGGTCCGTTTGTTCTTTGTCCATGATCTTGGTGACTTCGGGGGAAAGAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGAccc                                                                                                                                                                   <  1:410260/274‑1 (MQ=255)
                                                                                                                           gTACGGTCCGTTTGTTCTTTGGCCATGATCTTGGTGACTTCGGGGGAAACAATGAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTATAATCAGTTGCGTTAATCATTGAGATAGCGACGGCTAGCGCGAAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAAtcat                                                                                                                    >  1:711500/1‑271 (MQ=255)
                                                                                                                           gTACGGTCCGTTTGTTATTTGGCCATGATCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACgctgtcgaggcgctgaacgagctggcggagtcgcgcaatangagccgtagcgaactgatcg                                                                                                                                                                                          <  1:536339‑M2/204‑62 (MQ=255)
                                                                                                                                                 ccATGCTCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACAGCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTg                                                                                             <  1:274223/275‑1 (MQ=255)
                                                                                                                                                   aTGATCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTGTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGCTTTTCAGCATGAACCCAGTGACCAGCGCCTGCAATCACATGCGCCCGTGCCTGGGGAAATTTAGCCTGTAAATCATCAAGGTACTGCt                                                                                           >  2:643072/1‑275 (MQ=255)
                                                                                                                                                                            cactccgCCAGTCCGCTGCCCCGCTGGATCGCGCGCTCTAATACAGTAGCGCTATGTGTCACGTCAACGCCCACGCGCGGAAAGCTAGGCGGGCGCTTGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATCCCGCATCCGGTTTTTCAGCATGGACCTAGTGCCCCGCGCCTGCAATCCCATGCGCCCGTGTCTGTGGAAATTGAGGCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATTgccgc                                                                   <  2:711486/268‑1 (MQ=255)
                                                                                                                                                                                           ctGCCCGGATGGATAGCGCGCCATTATACATCAGCGCGATGCGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATTGCCGCCAGGGATAAAcagggc                                                   <  1:113038/275‑1 (MQ=255)
                                                                                                                                                                                           ctGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCACGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATTGCCGCCAGGGATAAAcagggc                                                   <  1:643086/275‑1 (MQ=255)
                                                                                                                                                                                                           cgcgcCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGtt                                                                                                                                                                                                                                    >  1:353602/1‑82 (MQ=255)
                                                                                                                                                                                                           cgcgcCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTg                                                                                                                                                                                                                                   >  2:686590/1‑83 (MQ=255)
                                                                                                                                                                                                               ccATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGtt                                                                                                                                                                                                                               <  1:686604/83‑1 (MQ=255)
                                                                                                                                                                                                               ccATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGt                                                                                                                                                                                                                                <  2:353596/82‑1 (MQ=255)
                                                                                                                                                                                                                cATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACgctgtcgaggcgctgaacgagctggcggagtcgcgcaatatgagccgtagcgaactgatcgaagagatgttaatgcagcaactggcggcgctgcgtagtcagggcatcgtttaaatttccactttca                                                                                                                        <  2:188705‑M2/185‑128 (MQ=255)
                                                                                                                                                                                                                cATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCCCATGCTCCCGTGCCTGTGGAAATTGAGCCAGTACATCATCACGGTACTGCTCGCTAACATACGGAGAATTGCCGCAAGGGATAAACAGGGCAGGGTGATCCCATGCCgggc                               >  1:188935/1‑273 (MQ=255)
                                                                                                                                                                                                                    ataCATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACgctgtcgaggcgctgaacgagctggcggagtcgcgcaatatgagccgtagcgaactgatcgaagagatgttaatgcagcaactggcggcgctgcgtagtcagggcatcgtttaaatttccactttcatgta                                                                                                                    >  1:188707‑M2/1‑54 (MQ=255)
                                                                                                                                                                                                                          cAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACg                                                                                                                                                                                                            >  2:5923/1‑91 (MQ=255)
                                                                                                                                                                                                                            gcgcGATGAGTCACGCCAACGCCCCAGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCTTTAATCATTGAGATATCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATGgccgc                                                                   <  1:657049/226‑1 (MQ=255)
                                                                                                                                                                                                                            gcgcGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGc                                                                                            >  2:378211/1‑201 (MQ=255)
                                                                                                                                                                                                                            gcgcGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATTGCCGACAGGGCAAAACAGGGCAGGGTGATCCCATGCCGGGAGTTTCCCCCAAcc                  >  2:728516/1‑275 (MQ=255)
                                                                                                                                                                                                                             cgcgATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGt                                                                                                                                                                                                                                >  2:54056/1‑68 (MQ=255)
                                                                                                                                                                                                                             cgcgATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATACCGCGTCATACCGCATCCGGTTTTTCCGCATGGACCCAATGACCCGCGCCTGCAATCACATGCGCCCGTTCCTGTGGaaa                                                                                                                        >  2:640775/1‑172 (MQ=255)
                                                                                                                                                                                                                              gcgATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATa                                                                                                                                                                                                        <  1:5923/91‑1 (MQ=255)
                                                                                                                                                                                                                                gATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGc                                                                                        <  1:378218/201‑1 (MQ=255)
                                                                                                                                                                                                                                 aTGAGTCACGCCAACGCCCTCGCGCAGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGGCCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGa                                                                                                                    <  1:640789/172‑1 (MQ=255)
                                                                                                                                                                                                                                 aTGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAAt                                                                                                                                                                                                                            <  1:54057/68‑1 (MQ=255)
                                                                                                                                                                                                                                            cAACGCCCACGCGCGGAAAGCGACGCGGACgctgtcgaggcgctgaacgagctggcggagtcgcgcaatatgagccgtagcgaactgatcgaagagatgttaatgcagcaactggcggcgctgcgtagtcagggcatcgtttaaatttccactttcatgtagcacagtgtgcagtcctgctcgtttgctgattccgcaagactgcctgttctgctatgattgcctttatccgtgggcaattttccacccccatttcaataagtttcaagaggtta  <  1:89878‑M2/275‑246 (MQ=255)
                                                                                                                                                                                                                                            cAACGCCCACGCGCGGAAAGCGACGCGGACgctgtcgaggcgctgaacgagctggcggagtcgcgcaatatgagccgtagcgaactgatcgaagagatgttaatgcagcaactggcggcgctgcgtagtcagggcatcgtttaaatttccactttcatgtagcacagtgtgcagtcctgctcgtttgctgattccgcaagactgcctgttctgctatgattgcctttatccgtgggcaattttccacccccatttcaataagtttcaagaggtta  <  1:434949‑M2/275‑246 (MQ=255)
                                                                                                                                                                                                                                              aCGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATTg                                                                       >  2:299409/1‑204 (MQ=255)
                                                                                                                                                                                                                                                  ccACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATTgccgc                                                                   <  1:299414/204‑1 (MQ=255)
                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                     
AGGCCACGTACTTTGTCGCGTTTTAGCTGGTTGCGTTTATTAATACGCAGCTGTTCATCGCGCGAAAGCGGATTAGTTTTCGGTCGTCCCGGTCGACGCTCGTGCGCGAACAGATCTAATGTCGTACGGTCCGTTTGTTCTTTGGCCATGATCTTGGTGACTTCGGGGGAAACAATCAGCCAGGCCTCTGCCCGGATGGATAGCGCGCCATAATACATCAGCGCGATGAGTCACGCCAACGCCCACGCGCGGAAAGCGACGCGGACGCTGGGTTTTTAATCAGTTGCGTTAATCATTGAGATAGCGACGGATAGCGCGTAATACCGCATCCGGTTTTTCAGCATGGACCCAGTGACCCGCGCCTGCAATCACATGCGCCCGTGCCTGTGGAAATTGAGCCAGTAAATCATCACGGTACTGCTCGCTAACATACGGAGAATTGCCGCCAGGGATAAACAGGGCAGGGTGATCCCATGCCGGGATTTTCTCCCAACCTACAATATGCGGATAC  >  CP009273/707206‑707716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.