| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,598,891 | G→T | 8.4% | S241I (AGC→ATC) | hyfD → | hydrogenase 4, membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,598,891 | 0 | G | T | 8.4% | 158.2 / 4.2 | 56 | S241I (AGC→ATC) | hyfD | hydrogenase 4, membrane subunit |
| Reads supporting (aligned to +/- strand): ref base G (28/23); new base T (2/3); total (30/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.53e-01 | |||||||||||
TTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCTGGTCGACCATCACTCAACTTGGCTGGATGTTCTTCGGCTTGTCGCTCTCCATCTTCGGCTCGCGGC > CP009273/2598623‑2599139 | ttGATCAGTTATTACCAGAGCGATAATGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTATTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCNTCCTGTTTNCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCt > 1:491796/1‑274 (MQ=255) ttCAGTTATTACCAGAGCGTTAAAGCGAAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTCGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTAtct < 1:693605/274‑1 (MQ=255) agCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCACGTGGGGGAAATCGGCCCAGCGACCGATGCAAGCGTGCCTACCGGACGCAATGGACGCGCCAACACCGATCAGCGCATATCCCCACGCCGCATCGac > 1:399250/1‑274 (MQ=255) cAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGAACAGCGCCTATCTCCACGCCGACACGAAGGTGAAAATGGGGGTTTa > 1:34028/1‑274 (MQ=255) gTTTCTTATTACTCATTTCGGCTTGTTGGGGTTGTAGTTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGATTAGAGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATACTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCcgcg < 1:692292/275‑1 (MQ=255) ttACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTCCCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCgcgc > 1:105104/1‑275 (MQ=255) cACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAAGGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGCTGGTGAACGGGGGCGTTTACATTTTTGCCCGCGCTATTATc > 2:735371/1‑274 (MQ=255) cACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTCTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGCCGCAATGGAAGCTCCAACACCGATCAGCGCCTAGCTCCCAGCCACAACAATGGTGAAAGAGGGCGTTTACATTTTTGACCGCGCTATTATc > 1:703913/1‑274 (MQ=255) gTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGATGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGATTACATTTTTGCCCTCGCTATTATCGAcctgtctcttata > 1:404079/1‑262 (MQ=255) ttGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTCTCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGGAATGGAAGCGCACACACCGATCAg > 2:519694/1‑194 (MQ=255) ggTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGATCGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCAt < 1:213207/275‑1 (MQ=255) ggTTGTATCTNGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCAGCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACACAATGGACGCGCCTACACCGATCAGCGcc < 1:519703/194‑1 (MQ=255) gTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAGGCGTGGCTACNGGACGCAATGGAAGCTCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCAtg > 1:666152/1‑275 (MQ=255) ccgccgcgACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCCTGGCTACCGGCCGCAATGGAAGCGCCCACACCGATCAGCGCCTATCCCCCCGCCGCATCCATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCCCCAGTATCGACGGCGGCACTACCCCCCAGGTGGTTggg > 2:739456/1‑271 (MQ=255) ccgccACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGGTTGCCGCGTGGGGGGAATCGGCCCAGCTACCGCTGCAAGCGTGGCTACCGGACGGAATGGAAGCGCCAACCCCGATCAGCCCCTCTCCCCCCCCCGCATCCCTGGGGAAAGCGGGGTTTTACATTTTGGGCCGCGCTATTAGTCACGGCGGCAATTGCCCGCATGTTATTggggtggt > 2:252730/1‑268 (MQ=255) aggggttttttGAGGACCGGAGCGGGTGGGTTTAGCGCGATGAGGGAGTTAGAGGGCGACTCATGTGATCTGGTTTAGGGCGGGATCCGGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGAGGAAAGCGTGGATAGCGGACGCAATGGAAGCGCCAACACCGATCAGCGCATATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCAt < 2:666138/269‑1 (MQ=255) gACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGGGTGGCTACCGGACGCAATGGAAGCGCCAACACCGANCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGc > 1:622493/1‑193 (MQ=255) ccGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGCCGCACGTTCTCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGCAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCACCACCGCTCAGCGCCTATCTCCACGCCGCATCGACGGTGCAAGTGGGCGTTTACATTTTTGCCCGCGCTCTTATCGACGGCGGCCATCTCACGCAGGTGCTAGGCGGCGGTGGCGTGGTCATGGCACTGGTc > 2:677155/1‑275 (MQ=255) aaCGTTTGCGCTTAGCGCNATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGcc < 1:573762/202‑1 (MQ=255) acttttGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGCGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCa < 1:735385/271‑1 (MQ=255) aCGTTTGCGCTTGGGGGGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGAGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCCCTGGTCACCa < 1:739470/274‑1 (MQ=255) gcgcTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTACCTGGTTTATGTCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCAACGGCGGCAATACACCGCATGTGATTGGCGGGCGTGGTAGGGGGCGGGCACTGGTCTCCATTCtttt > 2:7082/1‑274 (MQ=255) acacGGCGACGCACGTTAGCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCca < 1:360900/274‑1 (MQ=255) cGGCGACGCACGTTATCTGGTTTTTGGCGGCAGTCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCAcagc < 1:133606/275‑1 (MQ=255) ggCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCAcagc < 1:252733/274‑1 (MQ=255) cGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGcc > 1:303148/1‑166 (MQ=255) aCGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCACCACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCCTATGATTGGCGGCGTTGGCATGGTCATGGCCCTGGTCACCATGCTTTATGGCTTTTTGATGT‑TTTGccctccgcatgat > 2:133605/1‑264 (MQ=255) gCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCcgcg < 2:303143/166‑1 (MQ=255) tATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGATACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGAGCAGCGCCTATCGCCACGCCGCATCGATGGTGAAAGTGGGAGTTTAAATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCGCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCACAGGAGGATATGAAGCg > 1:87333/1‑275 (MQ=255) ggcggcATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGCGTGGAGGCGTTg > 2:666240/1‑193 (MQ=255) ggcggcATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCAAAGCAGGATATGAAGCGGTTGCTGGCCTg > 1:22925/1‑275 (MQ=255) cgtgagcatatttGCCCCGTGGGTCAAAACGGCCCACCGACCGATGCAAGCTTGGCTTCCGGACGCAATGTCAGCGCCAACACCGCGCAGCGCCTCTCTCCACGCTGCATCGCTGGTGAAATTGGGCGTTTACATTTTTGCCCGCGCTATTATCTACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATAGTCATTGCACTTGTCCCCATTCTTTATGGCTTTCTGATGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCTGGt < 2:87332/265‑1 (MQ=255) gcATCCTGTTTGCCGCGTGGGGGAAATCGGCCCANCTACCGATGCAGGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCAt < 1:666254/193‑1 (MQ=255) cATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGcc > 2:48391/1‑139 (MQ=255) ttgcTGTTCGCCTCGTCGGGGAAACCGCCCCACCTACCGATGCAAGCCTGGCTACAGGACGCGATGGCGGCGCCAACAACGCTCCTGTCCTATCGCCACGCAGCATCGATGGTGAAGGTGGGCGTTTGTTTTTTTGGCCGGGCTATGATCGACGGCGGTAATATCCCGCATGTGATTGGCCGCGTTTGCATTGTCATGGCGCTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCTGGTCGAc < 2:22924/272‑1 (MQ=255) ccTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAg < 1:142399/84‑1 (MQ=255) cTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCcgcg < 1:48392/139‑1 (MQ=255) cTGTGTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCATCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGNGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCTGGTCGAc < 1:611163/272‑1 (MQ=255) tttGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACAttttt > 2:585392/1‑129 (MQ=255) ccGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGccc < 1:585405/129‑1 (MQ=255) cgcgTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCATCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCAATGGTCACCATTCTTTATGGCTTTCTGATGTAGTTTGCACCGCAGGATATGAAGCGGTTGAGGGCCTGGTTGAccttgacgcta > 2:611150/1‑265 (MQ=255) cgcgTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGcc > 2:519489/1‑127 (MQ=255) tGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGAcgg > 2:436614/1‑140 (MQ=255) tGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGAGCAAAGTGGGCGTTTACATTTTTGCCcgcg < 1:519498/127‑1 (MQ=255) ggAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACggcggc < 1:436621/140‑1 (MQ=255) aTCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGACAGTGGGCGTTTACATTTTTGCCCGCGCTATTCTCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGCCTTTCTGAGGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCAGGTAGACCATCACTCAACTTGACTGGaag > 1:228511/1‑272 (MQ=255) gCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCg > 1:734334/1‑110 (MQ=255) gCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGccc > 2:267194/1‑198 (MQ=255) gCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGAcgg < 2:734320/110‑1 (MQ=255) gCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCAcagc < 1:267198/199‑1 (MQ=255) gCTACCGGACGCAATGGAAGCGCCAACACCGATCATCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGa > 2:268478/1‑179 (MQ=255) ccGGACGCAATGGAAGCGCCAACACCGATCATCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTa < 1:268482/179‑1 (MQ=255) cGCAATGGAAGCGCCAACACCGTTCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCTGGTCGACCATCACTCAACTTGGCTGGATGTTCTTCGGCTTGTCGCTCTCCATCTTCGGCTCGCGGc < 1:7082/275‑1 (MQ=255) ccAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCg > 1:486605/1‑79 (MQ=255) cacCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGcc > 2:634900/1‑62 (MQ=255) cacCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGAcgg < 2:486596/79‑1 (MQ=255) gATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCcgcg < 1:634914/62‑1 (MQ=255) aTCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCTGGTCGACCATCACTCAACtt > 2:656730/1‑207 (MQ=255) gcgcCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCTCGCTACTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCTGGTCGACCATCACTCAACTTGGCt < 1:656744/207‑1 (MQ=255) | TTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGCGGCATCCTGTTTGCCGCGTGGGGGAAATCGGCCCAGCTACCGATGCAAGCGTGGCTACCGGACGCAATGGAAGCGCCAACACCGATCAGCGCCTATCTCCACGCCGCATCGATGGTGAAAGTGGGCGTTTACATTTTTGCCCGCGCTATTATCGACGGCGGCAATATCCCGCATGTGATTGGCGGCGTTGGCATGGTCATGGCACTGGTCACCATTCTTTATGGCTTTCTGATGTATTTGCCACAGCAGGATATGAAGCGGTTGCTAGCCTGGTCGACCATCACTCAACTTGGCTGGATGTTCTTCGGCTTGTCGCTCTCCATCTTCGGCTCGCGGC > CP009273/2598623‑2599139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |