| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,366,567 | C→A | 5.2% | R123R (CGG→CGT) | nanA ← | N‑acetylneuraminate lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,366,567 | 0 | C | A | 5.2% | 244.1 / 3.3 | 79 | R123R (CGG→CGT) | nanA | N‑acetylneuraminate lyase |
| Reads supporting (aligned to +/- strand): ref base C (37/36); new base A (2/2); total (40/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.36e-02 | |||||||||||
GGTACTGCCGATACCACCATCAGCGCCCGCCAGCAGACCAGAGGCGAAGATTTCGTCGTAACCGTTATAGAGCACAAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAACCACCCACGTATAAACCGTCGATGCCCTGCTGAATATTGAAC > CP009273/3366309‑3366840 | ggTACTGCCGATACCACCATCAGCGCCCGCCAGCAGACCAGAGGCGAAGATTTCGTCGTAACCGTTATAGAGCACAAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCACATATTGCCCGCTAGTAATCGAAgt > 2:326745/1‑275 (MQ=255) tGCCGATACCACCATCAGCGCCCGCCAGCAGACCAGAGGCGAAGATTTCGTCGTAACCGTTATAGAGCACAAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCCTCGGAAAACCATCAGCCGAATCAACAAGGGCCCGATAGTAACCGCAGTGttcg > 2:40815/1‑274 (MQ=255) cgatcacaccaTAAGCGCCCGCAAGCAGACCAGAGGCGAAGATTTCGTCGTAACCGTTATAGCGCACAAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCAACTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGGGAGTATTACCCCAATCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCTCCGAATCAATAATTACCCGATAGGGATCGCAGTGTTCTTCa > 1:738536/7‑275 (MQ=255) ccaTCAGCGCCCGCCAGCAGACCAGAGGCGAAGATTTCGTCGTAACCGTTATAGAGCACAAGATCAGGATGTTCACGATGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGACGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGa < 1:695724/274‑1 (MQ=255) gagGCGAAGATTTCGTCGTAACCGTTATAGAGCACAAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACAATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGATCTTCAAAGCTGAAAGGATAATAAAACGGCGTGAcggc > 1:51767/1‑275 (MQ=255) aaGATTTCGTCGTAAACGTTAGAGAGCAAAAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCNGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAAAACGGCGTGACGGCGGAGAc > 1:517857/1‑275 (MQ=255) ccGTTATAGAGCACAAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCANCTACGCCANGCAATGTAACAAATGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTACAACGGCGCGACGGCGGAGACGGCGTCGAAGCCAt < 1:485728/274‑1 (MQ=255) cacaAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCTGCAAACCATCCGCCGAATCAATAATTGCCCGATCGTGATCGCAGTGTTCATCAAAGCCGAACGGATAGTAGAAAGACATGACGGCGGAGAGGGCAGCGAAGCAATAActatcgacca > 2:297204/1‑266 (MQ=255) cacaAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCAACATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTATAACGGCGTGACGGCGGAGACGGCATCCAAGACATAACGTTTAGCCg > 1:648771/1‑275 (MQ=255) cgacgGATCTGCTCCATCGGTTAGAGATCGCCATAGGTCTGTGTCAGCGCACCTACGCCAGGCAATGTAGCAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTTGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCa < 2:625770/192‑1 (MQ=255) aTCTGATAGAGATCGCCAGAGGTCTGGTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGATGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCGCGATAGTGAt > 1:491368/1‑163 (MQ=255) gATAGAGATCGCCAGATGTCTGTTTCAGCGCACCTACGCCAGGCAAAGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCTTCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCa < 2:491359/163‑1 (MQ=255) aTAGAGATCGCCAGAGGTCTTTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGGTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGGTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCaa < 1:287361/274‑1 (MQ=255) tAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTg > 2:566968/1‑177 (MQ=255) gaTCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAg < 1:566981/177‑1 (MQ=255) aTCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCTAACGGTGTGGGCTTGCGGGGGTGCTgtccgtgtggctt > 2:132376/1‑262 (MQ=255) aTCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGATGGCTTTCGGCGGTGATGACGCAACCGACga > 1:312204/1‑274 (MQ=255) ccAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTcgg < 1:132377/250‑1 (MQ=255) agGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTGCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGAAGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGCCGTGGGCGa > 1:694409/1‑273 (MQ=255) cgcACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCACGATAGTGATCGCAGTGTTCTTCAAAGCTg > 2:741236/1‑151 (MQ=255) ccTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCACGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAg < 1:741250/151‑1 (MQ=255) ccAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTgg > 2:33835/1‑246 (MQ=255) gCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGa < 1:33836/246‑1 (MQ=255) gTAACAAGTGTGTTGATCTGATCCAGTGTCGGTTTTCCCCCACTCAGGGCTGGAATTTTCTACACCACCATCGGCAACCCATCCGCCGAATCACTAATTGCCCGATAGTGAgcgc > 2:609180/1‑115 (MQ=255) cAAGGGTGTTGATCTTATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCGCGATAGTGATCGCAgtg < 1:609193/115‑1 (MQ=255) tgtTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTg > 2:377920/1‑209 (MQ=255) gggtgatctgatgCAGGGTCAGTTTTACCCCACTCATGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCAGAATAAATAATTGTCCGAGAGTGATCGGAGTGTTCTTTAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAGTCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCa < 2:517848/270‑1 (MQ=255) tttGATGTGAACAGNGGTCAGTTTTAACCCACTCAGGGCTTGAATGTTGTACACCACCATCGGCAAACCATCCGGCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTa < 2:551322/274‑1 (MQ=255) gatctgatcCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGa < 1:377927/209‑1 (MQ=255) tgatcCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTc > 1:434213/1‑275 (MQ=255) atcCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGANGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTAACTTTCGCCTCTTCGGCGCCGATTTCCAGTACC‑TGt > 1:629359/1‑271 (MQ=255) atcCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTGAATCTTACCTTTCGCCTCTTCTTCGACGATTTACATTACCATGTTc > 2:517527/1‑274 (MQ=255) atcCAGGGTCAGTTTTACCACACTCATGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTa > 1:495407/1‑166 (MQ=255) tcCAGGGGCACGTTTACCCCGCTCAGTGGTTGTATTTTTTTCACACCCCGCTGTAAACCATCCGCCTAATACAGAATTGCCCGAGTGTGCTCCCAGGGTTCTTCAAAGCTGAAAGGATAGTAGAACGTCGTGACGGCGGAGACGGCATCGAAGCGAGAACGTTTAGGCGTTGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCCCg < 2:312199/275‑1 (MQ=255) aGGGTCAGTTTTACCCCACTCAGGGCTGAAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCANTAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCTCCTCTTCGGcgacga < 1:517536/253‑1 (MQ=255) aGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGcc > 1:21689/1‑72 (MQ=255) ttACCCCACGCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGAt < 2:21688/72‑1 (MQ=255) tACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGGGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCtt < 1:326751/274‑1 (MQ=255) ccccACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGACCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGAAGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTCCACGCTCGGAAAGGCTTTGt > 1:209194/1‑275 (MQ=255) cTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCa > 2:731827/1‑126 (MQ=255) aGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCt > 2:141914/1‑176 (MQ=255) aGGGCTGGAATGTTGGACACCACCGTCGCGAAACCATCCGCCGAATCAATAATTGcc > 1:512565/1‑57 (MQ=255) gggCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGt < 1:666709/63‑1 (MQ=255) gggCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGa < 1:731841/126‑1 (MQ=255) ggCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTGGTTGGCTTTCGGGGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATATTACCTTTCGCCTCTTCGGCGACGATTGCCAGTACC‑TGTTCACTCTCGGAAGGGCNTTTTACAAAGGcc > 2:530518/1‑274 (MQ=255) cTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGAt < 2:512556/57‑1 (MQ=255) cTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACg < 1:141915/176‑1 (MQ=255) tGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGACCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAAcc > 2:28735/1‑180 (MQ=255) gAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGAt > 2:23204/1‑60 (MQ=255) gAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCACGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGa > 1:154556/1‑171 (MQ=255) gAATGTTGTACACCACCATCGGCAAAACATCCGCAGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGGCGCAACCGACGTNGGCGATGANTTTAATCTTACCTTTCGCCTCTTCGGc > 1:473827/1‑220 (MQ=255) aTGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACg < 1:28736/180‑1 (MQ=255) gttgtACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCa < 1:23205/60‑1 (MQ=255) gttgtACACCACCATCGGCAAACCATCCGCCGAATCAATAAGTGCACGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCa < 2:154555/171‑1 (MQ=255) ttgtACGCTACCCTCGGCGAACCATCCACCGCATCAATAATTGCCCGATAGTTATAGCAGTGTTCTTCAAAGCTGATAGGATAGTAGAATGCTGTGACGTCGGCTACTGCATCGCAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGTCTTTCGGCGGTGCTGACGCAACCGCTCTGCGCGATGAGTTTAATCTTATCTTTCGCCTCTTCGTCGACGATTTCCGGTCCC‑TGCTCACGCTAGGACCGTCNTTGTGGAAAGGcccgcgcgcggaa > 2:425531/1‑264 (MQ=255) ttgtACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGNTGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTc > 1:534979/1‑242 (MQ=255) ttgtACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGAt > 1:627294/1‑185 (MQ=255) ttgtACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTc > 2:583838/1‑242 (MQ=255) ttgtACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGAAGAAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTACAGGACC‑TGTTCACGCTCGGGAAGGCTTTGTACAAAGGCCTCgccggccg > 2:680514/1‑274 (MQ=255) gtACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGc > 1:544547/1‑56 (MQ=255) gtACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCTaa > 1:416542/1‑274 (MQ=255) gtACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCCCGGAAAGGCTTTGTACAAAAGCCTCGCCGGTCGaa > 1:153212/1‑274 (MQ=255) tACACCAACATCGGCAAACCATCCGACGAATCAATAATTGCCCGATATTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCNATAACGTTTATGCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAac < 1:680528/274‑1 (MQ=255) acacCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCTGTGCTGACGCAACCGACGTGGGCGa < 1:79618/180‑1 (MQ=255) acacCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGt < 2:627280/185‑1 (MQ=255) acacCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGaa < 1:583851/242‑1 (MQ=255) accaccATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAgtg < 2:544536/56‑1 (MQ=255) ccaccaTCGGCAAACCATCCGCCTAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTAAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAaccacc < 1:425538/274‑1 (MQ=255) ccaccaTCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGGACAGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAaccacc < 1:40816/274‑1 (MQ=255) acaaaaccGGCCAACCATCCGCCGAATCAATAATTGCCCGATAGTGGTCGCAGTGTTCTTCAAAGATGAGAGGATAGTAGAACGGCGTGACGGCGGGGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAaccacc < 2:694395/267‑1 (MQ=255) ccaTCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTg > 2:273000/1‑65 (MQ=255) ccaTCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACgg > 2:89583/1‑99 (MQ=255) tCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGAt > 1:706388/1‑42 (MQ=255) tCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTgg > 2:599445/1‑167 (MQ=255) cGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAg < 1:273004/65‑1 (MQ=255) cGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATc < 1:89584/99‑1 (MQ=255) cAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCa < 2:706374/42‑1 (MQ=255) cAAACCATCCGCCGAATAAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGa < 1:599458/167‑1 (MQ=255) ccgccgAATCAATAATTGCCCGATAGGTATCGCAGTGTTCTTCAAAGGTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAACCACCCACGTATAAACCGTCGATg < 1:297209/275‑1 (MQ=255) acagattaataatTGCCCTATAGTGATCGCATTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAACCACCCACGTATAAACCGTCGATGcc < 1:275568/267‑1 (MQ=255) aaagacaggCCCGATAGTGATCGCAGTGTGCTTCAAAGCTGAAAGGATAGTAGGCCGGCGTGCCGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAACCACCCACGTATAAACCGTCGATGCCctgct < 2:331547/265‑1 (MQ=255) cccGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTTCCGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAACCACCAACGGAAAAAACGCTGCTGCCCTGCTGnagtttgcct > 2:275564/1‑267 (MQ=255) cccGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAg > 1:307182/1‑205 (MQ=255) | GGTACTGCCGATACCACCATCAGCGCCCGCCAGCAGACCAGAGGCGAAGATTTCGTCGTAACCGTTATAGAGCACAAGATCAGGATGTTCACGACGGATCTGCTCCATCTGATAGAGATCGCCAGAGGTCTGTTTCAGCGCACCTACGCCAGGCAATGTAACAAGTGTGTTGATCTGATCCAGGGTCAGTTTTACCCCACTCAGGGCTGGAATGTTGTACACCACCATCGGCAAACCATCCGCCGAATCAATAATTGCCCGATAGTGATCGCAGTGTTCTTCAAAGCTGAAAGGATAGTAGAACGGCGTGACGGCGGAGACGGCATCGAAGCCATAACGTTTAGCCGATGCCGCAAGTTGTTGGCTTTCGGCGGTGCTGACGCAACCGACGTGGGCGATGAGTTTAATCTTACCTTTCGCCTCTTCGGCGACGATTTCCAGTACC‑TGTTCACGCTCGGAAAGGCTTTGTACAAAGGCCTCGCCGGTCGAACCACCCACGTATAAACCGTCGATGCCCTGCTGAATATTGAAC > CP009273/3366309‑3366840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |