| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 16 (0.620) | 32 (1.240) | 30/294 | NT | 60.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | 26 (1.000) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
GGTTTTCCGCCAGA‑CGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTC > CP009273/359838‑360375 | agTTTTCC‑CCANACCGCCCCTCCTGCCCGGCGCTGTTGTGCCCGGCTTCTTTCCCTGCGGTCGCGTTCGGTTGCACTGCGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTCGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAGTCCTgg < 2:48350/274‑1 (MQ=255) gA‑CGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGAACCCCAATTc > 1:48352/1‑259 (MQ=255) gggtcTGATGTCCCCGGCTTCTGACCTTGCGGTCGCTTTCGGTTGCATTACGCGTACTGTGAGCAAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGGTCAGGCATTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGCGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc < 1:271664/270‑1 (MQ=255) gttgCCCGGCTGCTGACCCTTCGGTCGGTTTCGGTTGCACTTCGCGTACTGTGTGTCAGGGTTGCCAGGCGCTCTCCGGCTGCGGTAGTTCCGGCAGTTCAATCAACTGTTTCCCTTGTGGAGCGACATCCCGAGGCACGTCACCGCTTGCCAGCGGCTTACCATCCAGCGCAACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCg < 2:490958/272‑1 (MQ=255) cccGGCTTCTGACCATGAGGTCGCGTTCGGTTGCCCTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTATGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTACAGGAGCTCCACTCATAAGCTGGCAAACATGAGAATTACAATCCCCCATTCCCGGCAGGTCATGGCAGGCGCACTTCCCGCcccccccccgttg > 2:138266/1‑269 (MQ=255) ccgatgataagctgtaaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaacgacagacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTTCTGCCCGCCACCCccccggcccctgac < 1:432464‑M1/54‑7 (MQ=255) aTGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACGTCACCGCTTGCCAGCGGCTTACCATCGAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATAAGAAATCCGATCCCCAATTCATGGCAGTTTATGGCGGGCGTCCGGCCCGCCACCCCCCTGGGCCTGTCCTCGCAACg > 2:149915/1‑274 (MQ=255) cgcgTACTGTGAGCCCGAGTTGCCCGGCGCTCGCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg < 1:138272/275‑1 (MQ=255) cttaattccttgctgtttatggcgtgcctcctccccgccaccctcccggccgttgcttcgcaacgttcaaatccgctcccggcgtatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgcgcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc > 1:149921‑M1/187‑275 (MQ=255) caccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaagtAATGACTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGCCTCGCAACGTTTAAATCCGCTCCCGGCGGATTTGTCCTACTCCGTACAGCGTTCACCGACAAACaacagctac < 1:434457‑M1/126‑5 (MQ=255) cctccgggccgttgcttcgcaacgttcaaatccgctccctgcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGGCCTg < 2:180530‑M1/30‑1 (MQ=255) cgggccgttgcttcgcaacgttcaaatccgctccctgcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCg > 1:180536‑M1/142‑175 (MQ=255) ttCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGAAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCGGCCCGCCAACCTACGGGCCGTGGCTTCGCAACGTTCAAATCCGATACcggc > 1:82722/1‑213 (MQ=39) ttCAATCAACTGTTTACCTTGGGGAGCGTCATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc > 1:338481/1‑157 (MQ=255) atcaaCTGTTTACCTTTTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTcc < 2:338470/157‑1 (MQ=255) atcaaCTGTTTACCTTGTGGAGCGACAGCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCTGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGCAAGCGTGCACCGAAAAAAAACAAATAAAACGAAAGGCCCAGTATTTc > 1:287419/1‑275 (MQ=255) ctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTcc < 2:467775‑M1/6‑1 (MQ=255) cggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttagactgagcctttcgttttatttgatgcctggggaattAATTCCTGGc > 1:467788‑M1/108‑117 (MQ=255) tCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:119818/1‑140 (MQ=255) gagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTc < 2:119812/140‑1 (MQ=255) agcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCTCCgg < 2:363012‑M1/45‑1 (MQ=255) cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTc < 2:290510‑M1/27‑1 (MQ=255) ttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgtgcctttcgttttatttgatgcctggggaattAATTACTGGCAGTTTATGGCGGGCGTCCTGCCAGCCACCCTCCGGGCCg > 1:363024‑M1/80‑128 (MQ=255) caccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGc > 1:290518‑M1/78‑108 (MQ=255) aGCGCCACCATCCAGTGCAGGAGGACCGCTGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCCAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACNGATAAAACGAAAg > 1:348424/1‑197 (MQ=255) gataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaatt < 2:399339‑M1/4‑1 (MQ=255) cgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAacaaca > 1:192949/1‑182 (MQ=255) ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACCGATAAAACGAAAg < 1:20125‑M1/134‑1 (MQ=255) aaacgaaaggcccagtctttcgactgagcctttcgttttatttgatacctggggaattAATTCCTg > 1:399352‑M1/59‑66 (MQ=255) accgaaaggccctgtttttcgactgggcctttcgttttatttgatgcctgggtaattAATTCCTTGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc > 2:20124‑M1/58‑195 (MQ=255) accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa < 2:192943/182‑1 (MQ=255) gaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCt > 2:58769‑M1/55‑83 (MQ=255) gaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCt < 1:58771‑M1/29‑1 (MQ=255) gcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcg < 2:136660‑M1/21‑1 (MQ=255) ccagtctttcgtctgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTTGCAGAGTTCAAATCCGCTCCCGGCGGAt > 1:346947‑M1/48‑131 (MQ=255) agtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg > 1:136666‑M1/46‑70 (MQ=255) agtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCGCCACCCTCCGGGCCGTTGCtt < 2:233350‑M1/55‑1 (MQ=255) tttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa > 1:233357‑M1/42‑100 (MQ=255) tcgactgagcctttcgttttatttgatgcctgggtaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGATAGGCCCAGTCTTNCGACTGAGNCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATAAGCCTATTTTTATAgg < 1:321825‑M1/236‑1 (MQ=255) ccGATGATAAGCTGTAAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAACGACAGACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgttctgcccgccacccccccggcccctgac < 1:432464‑M2/275‑55 (MQ=255) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTTGCCGTTTATGGCGGGCGTCCCGCCCGCCTCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTTCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 1:9339/186‑1 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcggg < 2:321293‑M1/23‑1 (MQ=255) gtttttggttttatttgattcctgggnaattAATTCCTGGCAGTTTATGGCGTGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCTCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTc > 2:321815‑M1/32‑275 (MQ=255) ctttcgttttatttgatgcctggggaattCATTCCTGGCAGTTTATGGCGGGCGTc > 1:321303‑M1/30‑56 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgg > 1:417197‑M1/30‑51 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:376565‑M1/85‑1 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc < 2:419765‑M1/89‑1 (MQ=255) tggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg < 1:183283‑M1/79‑1 (MQ=255) tggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg > 2:183277‑M1/10‑88 (MQ=255) tggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc > 1:376578‑M1/10‑98 (MQ=255) tggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTAc > 1:419778‑M1/10‑102 (MQ=255) cttaattcCTTGCTGTTTATGGCGTGCCTCCTCCCCGCCACCCTCCCGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGTATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGCGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtc > 1:149921‑M2/4‑186 (MQ=255) | GGTTTTCCGCCAGA‑CGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTC > CP009273/359838‑360375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |