| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 481,667 | IS1 (–) +9 bp | 100% | coding (451‑459/648 nt) | acrR → | transcriptional repressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 19796 = | NA (NA) | 31 (1.200) | 28/294 | NT | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | CP009273 | = 481675 | 0 (0.000) | coding (459/648 nt) | acrR | transcriptional repressor | |||||
| * | ? | CP009273 | = 20563 | NA (NA) | 15 (0.580) | 12/294 | NT | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | CP009273 | 481667 = | 0 (0.000) | coding (451/648 nt) | acrR | transcriptional repressor | |||||
AGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGATGTATCTCCTGTGCCCCACGCTTCGTAATCCTGCCACTAACGAATAACCCTGAATCTGACTCCAGGATTTTTCCTGGACAT > CP009273/481394‑481898 | ataatgcgggctgttgcccggcatccaacgccatacatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccactccgtcagtagctnaacaggagngacagctgatagaaacagaagccactggagcacctcaaaaaaaacaacaaacactaaatcagtaagttggcagcatcaccgc > 1:328764‑M2/274‑275 (MQ=255) ggttgtgaagcggtgtaagtgaactgcagttgccctgttttacggcagtgagagcagagatagcgctgatgtctggcggtgcttttgcccttacgcaccaccccgtcagtaggtgtacaggagggacagctgatagaaacagaactcactggagcacctcaaacacaccatcatacactaaatcagtaagttggcagcatcacaACGAAAATGTTGCCTGCGGATTTAAAGACGCGTCCCGCCGCAATTATTAAGCGCGGCTATATTTccggtc > 2:128185‑M2/205‑272 (MQ=255) agaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcggtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCATTATTTCCGTCCTGATgg > 1:57786‑M2/200‑275 (MQ=255) gaTATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAACTGggtaatgactacaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgtagctctaccgtttttgatcatta < 2:159744‑M2/274‑88 (MQ=255) tGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgaagctccacagattttgagaacgacaacgacttccgt < 1:113828‑M2/275‑101 (MQ=255) gcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACg > 1:125897‑M2/143‑275 (MQ=255) agaTTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttt < 1:226825‑M2/158‑31 (MQ=255) tataTTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGc > 2:68290/1‑117 (MQ=255) tataTTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatg > 2:226818‑M2/1‑124 (MQ=255) ttCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGaaa < 1:68292/117‑1 (MQ=255) caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGcc > 1:199327‑M2/107‑244 (MQ=255) ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGATGTATCTCCTGTGCCCCACg < 1:128191‑M2/171‑1 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCCGCAATgattat > 2:301006‑M2/80‑129 (MQ=255) ctgatagaaacagaagccactgcagcacctcaaaaacaccatcagacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTNGCGCAGCAATTATTANgcgc < 1:301015‑M2/54‑1 (MQ=255) aagaaaaaagtaattTCTGTTTGGAAAGTTATTAACTTATATAAAAATCTATATAACATTGTATTGTGGCGTAAATGggtaatgactccatcttattgttagtgttttatgttcagataatgcccgatgactttatcatgcatctccaccgatttttagaacgacagagacttccgtcccagccgtgccaggtgatgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgg > 2:226239‑M2/7‑77 (MQ=255) ggCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc < 1:160676‑M2/173‑98 (MQ=255) caACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc > 2:160670‑M2/1‑72 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGATGTATCTCCTGTGccc > 2:310371‑M2/63‑229 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGATGTATCTCCTGTGCCCCACGCTTCGTAATCCTGCCACTaa > 1:139996‑M2/63‑253 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGATGTATCTCCTGTGCCCCACg < 1:310380‑M2/171‑1 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGATGTATCTCCTGTGCCCCACGCTTCGTAATCCTGCCACTAACGaa < 2:139990‑M2/195‑1 (MQ=255) tctcTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctca < 1:300093‑M2/209‑146 (MQ=255) tgtctgGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattc > 2:300084‑M2/1‑60 (MQ=255) gtctgGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgt < 2:466240‑M2/87‑29 (MQ=255) gtctgGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagt < 1:358224‑M2/85‑27 (MQ=255) gtctgGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttatt < 1:143210‑M2/79‑21 (MQ=255) ggAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgtttta > 1:466253‑M2/1‑55 (MQ=255) ggAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttt > 2:358212‑M2/1‑55 (MQ=255) ggAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgata > 2:143204‑M2/1‑55 (MQ=255) aaGTTATTGCCGTATAGAACAAACTTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtc > 1:159750‑M2/1‑52 (MQ=255) tGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga < 2:195859‑M2/133‑88 (MQ=255) cGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc > 1:195865‑M2/1‑42 (MQ=255) ataGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatga < 1:471534‑M2/47‑9 (MQ=255) ataGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaat < 2:94095‑M2/45‑7 (MQ=255) cactaaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATtattat > 2:394414‑M2/30‑79 (MQ=255) aaCAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactcc > 2:471521‑M2/1‑35 (MQ=255) aaCAAACGTTAAAACATTGTATTGAAGCGAAAATGggtaatgact > 1:94097‑M2/1‑35 (MQ=255) aaatcagtaagttggcagcatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATgcgc < 1:394427‑M2/54‑1 (MQ=255) cAAACGTTAAAACATTGTATTGAAGCGAAAATGgg < 2:388155‑M2/35‑3 (MQ=255) aCGTTAAAACATTGTATTGAAGCGAAAATGggtaatgactccaac < 2:16778‑M2/45‑16 (MQ=255) cGTTAAAACATTGTATTGAAGCGAAAATGggtaat > 1:388168‑M2/1‑29 (MQ=255) tAAAACATTGTATTGAAGCGAAAATGggtaatgactccaacttat > 1:16779‑M2/1‑26 (MQ=255) ggcaggatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGAt > 1:157811‑M2/13‑164 (MQ=255) aTTGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgtttta < 1:57371‑M2/52‑33 (MQ=255) tGTATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc < 2:378054‑M2/120‑103 (MQ=255) ggatcaccGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGATGTAt < 2:157805‑M2/156‑1 (MQ=255) tATTGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgtt > 2:57369‑M2/1‑16 (MQ=255) ttGAAGCGAAAATGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc > 1:378067‑M2/1‑14 (MQ=255) cGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCAt > 2:47366‑M2/2‑141 (MQ=255) | AGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCTTACTGGAGATGTATCTCCTGTGCCCCACGCTTCGTAATCCTGCCACTAACGAATAACCCTGAATCTGACTCCAGGATTTTTCCTGGACAT > CP009273/481394‑481898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |