Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	578965	579140	176	4 [3]	[1] 4	[appY]	[appY]

CAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAA  >  CP009273/578878‑578969                                                                                       |      cAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGACAAATGTAACTTTGAAATAAGTTAGAAt      >  1:29775/1‑88 (MQ=255)   agagGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGaa       >  2:179867/1‑85 (MQ=255)     agGTTACAGGTGCGTTGTAGTTAGTTTATGTTAATAAAAAGCAGAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATaaaa  <  2:29774/88‑1 (MQ=255)       gTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATaaa   <  1:179873/85‑1 (MQ=255)                                                                                       |      CAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAA  >  CP009273/578878‑578969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑