New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 454255	2 (0.070)	26 (0.990)	24/218	NT	93.1%	intergenic (+99/‑89)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	CP009273	= 604803	NA (NA)					intergenic (+170/+112)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex

GCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTATTTGTCGGGCGGGAAAAATCTATCCGTTGTCTGGAAGCGGCGATGGACCATGATAAAAAAATTATGCTGGTCGCGCAG  >  CP009273/454013‑454508                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                              gCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctg                                                                                                                                                                                                                                <  1:407504‑M1/274‑32 (MQ=255)                    tGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTAATCGACGAGTCGGTAATTGATGGTCAAAGCAACCCGTTGCTGCTTTATGGCAAGCCGGACGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAACGGGGGGATTTTATCTCCCCTTTAATTTTTCCTATATTCTCGGCGTTGAATGTGGGGGAAACATCCActaagcgctacattaaggggttaaccatctgaagaatgcgacgcctacgtg                                                                                                                                                                                                            >  2:35852‑M1/1‑224 (MQ=255)                      tgaaggtacaggtccatgtaagcCGTCTAAAAAGTGTTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGATGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTGTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgc                                                                                                                                                                                                           <  1:655998‑M1/263‑53 (MQ=255)                                            aCGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTAAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGAAACAGGCATCTGGTGAATAATTAACCATTGCCATACAATACGTTAACAAAAAAGGGGGGATTTTATCTCCCCTTAACTTTTTCCTATATTCTCGGCGTTGAATGGGGGGGAAACATCCCatacgcgctaacttaagggttgaaacatcagaagaatgcgacgcctcggtggcgcgttaagaccttatctttat                                                                                                                                                                                     >  2:655987‑M1/1‑200 (MQ=255)                                                                    aGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataag                                                                                                                                                                                                                                                          >  1:85226‑M1/1‑176 (MQ=255)                                                                        ggTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgct                                                                                                                                                                                                                                                      <  2:85226‑M1/181‑10 (MQ=255)                                                                             ttGATGGTCAAATCAAATCTTTGCTGATTTATGGTAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGCTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCGCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggata                                                                                                                                                   <  1:45557‑M1/275‑109 (MQ=255)                                                                                                                                       tGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgac                                                                                                                                                                                                                     >  1:244662‑M1/1‑109 (MQ=255)                                                                                                                                           gAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcct                                                                                                                                                                                                                 <  2:244658‑M1/151‑47 (MQ=255)                                                                                                                                               aatTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCat                                                                                                                                                                                                                                                             <  1:559219‑M1/103‑3 (MQ=255)                                                                                                                                                                   ttAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta                                                                                                                                                                                                                                                     >  2:410736‑M1/1‑81 (MQ=255)                                                                                                                                                                     aGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcatcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggcac                                                           <  1:35852‑M1/275‑197 (MQ=255)                                                                                                                                                                       ttAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaactt                                                                                                                                                                                                                                                 <  1:410741‑M1/91‑15 (MQ=255)                                                                                                                                                                           ccAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcg                                                                                                                                                                                                               >  1:570000‑M1/1‑73 (MQ=255)                                                                                                                                                                             aaaaaGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatac                                                                                                                                                  >  2:159440‑M1/1‑71 (MQ=255)                                                                                                                                                                               aaaGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgc                                                                                                                                                                                                           <  2:569989‑M1/121‑53 (MQ=255)                                                                                                                                                                                 aGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtc                                                                                                                                              <  1:159443‑M1/180‑114 (MQ=255)                                                                                                                                                                                     gggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttc                                                                                                                                                                                  >  1:97709‑M1/1‑63 (MQ=255)                                                                                                                                                                                         ttttATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttca                                                                                                                                                                              <  2:97709‑M1/140‑82 (MQ=255)                                                                                                                                                                                           ttATCTCCCCTTTAATTTTTCCTCTATTTTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaaggg                                                                                                                                                                                                                                            >  1:486575‑M1/1‑57 (MQ=255)                                                                                                                                                                                             aTCTCCCCTTTAATTTTTCCTCTATTCTCGCCGTTGAATGTGGGGGAAACATCCCata                                                                                                                                                                                                                                                            >  2:175332‑M1/1‑55 (MQ=255)                                                                                                                                                                                               ctcCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttga                                                                                                                                                                                                                                        <  2:486567‑M1/76‑24 (MQ=255)                                                                                                                                                                                                 ccccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcg                                                                                                                                                                                                                                                        <  1:175336‑M1/58‑8 (MQ=255)                                                                                                                                                                                                            tttCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcg                                                                                                                                                                                                               >  1:28821‑M1/1‑40 (MQ=255)                                                                                                                                                                                                             ttCCTCTATTCTCGGAGTTGAATGTGGGTTAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctg                                                                                                                                                            >  1:470287‑M1/1‑39 (MQ=255)                                                                                                                                                                                                                ctctATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgc                                                                                                                                                                                                           <  2:28821‑M1/88‑53 (MQ=255)                                                                                                                                                                                                                 tctATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcag                                                                                                                                                        <  2:470280‑M1/138‑104 (MQ=255)                                                                                                                                                                                                                              agtgcttatggggTAACATCCCCATATACTGACGTACATGTTCATAGTTGGCGTTTAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTCTTTGTCGGGCGGGAAAAATCTATTCGTTGTTTGGa                                             >  1:189325/10‑232 (MQ=255)                                                                                                                                                                                                                              agcgcttatggggAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTATTTGTCGGGCGGGAAAAATCTATCCGTTGTCTGGAAGCGACGATGGACCATGATAAAAAAATTATGCTGGTCGCGCag  >  1:199949/10‑275 (MQ=255)                                                                                                                                                                                                                               tGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatgg                                                                                                                                    >  1:119036‑M1/1‑21 (MQ=255)                                                                                                                                                                                                                                   tgtgGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccac                                                                                                                                <  2:119035‑M1/144‑128 (MQ=255)                                                                                                                                                                                                                                                tCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctctgtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccac                                                                                                                                >  1:386622‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                tCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcaggggtactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctcc                                                                                             >  1:130151‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                  ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttc                                                                                                                                                                                  <  1:440138‑M1/79‑78 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                              GCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTATTTGTCGGGCGGGAAAAATCTATCCGTTGTCTGGAAGCGGCGATGGACCATGATAAAAAAATTATGCTGGTCGCGCAG  >  CP009273/454013‑454508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.