New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 20563	NA (NA)	12 (0.440)	11/226	NT	30.8%	noncoding (1/768 nt)	IS1	repeat region
	?	CP009273	= 879040	27 (0.990)					intergenic (‑196/‑89)	ybjG/mdfA	undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein

CGTTAATAAGAGAGAATAGAGAGAGATTCAAATTTTCCAGCATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTG  >  CP009273/878802‑879314                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                   cgTTAATAAGAGAGAATAGAGAGAGATTCAAATTTTCCAGCATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTACCGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCg                                                                                                                                                                                                                                                >  1:308757/1‑275 (MQ=255)             agaATAGAGAGAGATTCAAATTTTCCAGCATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCggtgataatgccaacttactgatttagtgtatgactgtctcttctac                                                                                                                                                                                                                                     <  1:291449‑M2/274‑48 (MQ=255)                                                        cgtaatcagagagcgatatacgcagcgaattgagcggcataacgtgaatctgaggcagaccctggcacggctgggaccgcaggcgccgtcgtactcaacatcggtggagctgcatggcaacgtcatcgggcatcaaccgaacataaaacactatcaataagttggagtcattaccAGAATGTGCTTAACCGTGGTTTCAGCTACAAACTTCGCTTTCTCGTTAGCTGCCCTTTTATTAAACTCTGCGCGCTTATTATTGGCGAAGAACTtgca                                                                                                                                                                                           <  2:213800‑M1/98‑1 (MQ=255)                                                                               gtgcggaaaNTCGTTGAGAATAAAGTGCATGTTAATCTGGGTACTGCGTCTTCTTCTTATTTCCCGCAAGCGGACTTTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATTAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGc                                                                                                                                                                  <  2:261866/268‑1 (MQ=255)                                                                                         tCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCggtgatgctgccaacttactgatttagtgtatgatggtgttttggaggtgttctagtggcttctgtttctatcagctgtccctcctgttaagttacggacggggggggtcggaaggggaaaaga                                                                                                                                                        <  2:621810‑M2/275‑125 (MQ=255)                                                                                                     aaGTGCAGGTTAAACTGGGTAAATCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGTATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTATTAATGTAAGAATGTGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacat                                                                                                                                            >  1:621821‑M2/1‑139 (MQ=255)                                                                                                                  cacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCg                                                                                                                                                                      <  2:512239‑M1/119‑1 (MQ=255)                                                                                                                      tggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGc                                                                                                                                                                  >  1:512249‑M1/114‑236 (MQ=255)                                                                                                                                               cTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTCTTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCTCTACTTGTCTGGTGCTTTACGACttggaaatggat                                                                                                  >  2:99128/1‑265 (MQ=255)                                                                                                                                                                  gtgggtgATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATCATGTAAGAATGTGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcactcctgttaagctactgacggggtggtgcgtaacggcaaaagcaccgtcggaaatcagcgctatctatgctctccatgccgtaaaacatggctcatgcagttcaattacaacgct                                                                                <  1:48847‑M2/274‑197 (MQ=255)                                                                                                                                                                      gtgATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCt                                                                                                                                                                                                                                          >  2:410624/1‑116 (MQ=255)                                                                                                                                                                          ttGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTgcgc                                                                                                                                                                                                                                      <  1:410629/116‑1 (MQ=255)                                                                                                                                                                                   gCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATATTGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATtgcatg                                                                                                                                                                                         >  1:627865/1‑152 (MQ=255)                                                                                                                                                                                    cATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGcc                                                              >  1:325123/1‑274 (MQ=255)                                                                                                                                                                                       aGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCaaa                                                                                                                                                                                     <  2:627854/152‑1 (MQ=255)                                                                                                                                                                                         gTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGCTTTc                                                                                                                                                                                                                                                                      >  1:529935/1‑69 (MQ=255)                                                                                                                                                                                            aaataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCa                                                                                                                                                   >  2:458408/1‑181 (MQ=255)                                                                                                                                                                                             aataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATtgcatg                                                                                                                                                                                         >  1:478727/1‑142 (MQ=255)                                                                                                                                                                                             aataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGCTTTCAGCt                                                                                                                                                                                                                                                                  <  2:529924/69‑1 (MQ=255)                                                                                                                                                                                                aaaaCTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGATTCCAGTGCCAGTCTTGGACGTCAGGCg                                                                                                                                               <  1:458414/181‑1 (MQ=255)                                                                                                                                                                                                 aaaCTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCaaa                                                                                                                                                                                     <  2:478719/142‑1 (MQ=255)                                                                                                                                                                                                   aCTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTa                                                                                                                                                                                                                                                                                 >  2:267542/1‑48 (MQ=255)                                                                                                                                                                                                   aCTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAatat                                               <  1:99128/274‑1 (MQ=255)                                                                                                                                                                                                       taaaacactatcaataagttggagtcattaccAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATATCAgg                                           >  1:213804‑M1/33‑274 (MQ=255)                                                                                                                                                                                                       aaagaaagCGTAGCTATACTCGTAATAATGTAAGAATGTGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagct                                                                                                                                                                                                       <  2:609420‑M2/118‑78 (MQ=255)                                                                                                                                                                                                       aaagaaagCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCg                                                                                                                                                                                                                                                                             <  1:267546/48‑1 (MQ=255)                                                                                                                                                                                                           aaagCGTAGCTATACTCGTAATAATGTAAGAATGTGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc                                                                                                                                                                                                   >  1:609431‑M2/1‑37 (MQ=255)                                                                                                                                                                                                            aagCGTAGCTATACTCGTAATAATGTAAGAATGTGCggtgatgctgccaacttactgat                                                                                                                                                                                                                                                             <  1:209527‑M2/59‑24 (MQ=255)                                                                                                                                                                                                                gTAGCTATACTCGTAATAATGTAAGAATGTGCggtgatgctgccaacttactgatttag                                                                                                                                                                                                                                                         >  2:209523‑M2/1‑32 (MQ=255)                                                                                                                                                                                                                accaataagttggagtcattaccAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCtt                                                                                                                    <  1:309977‑M1/169‑1 (MQ=255)                                                                                                                                                                                                                    ataagttggagtcattaccAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACg                                                                                                                >  2:309972‑M1/20‑192 (MQ=255)                                                                                                                                                                                                                            gTAATAATGTAAGAATGTGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttc                                                                                                                                                                                          <  1:85087‑M2/110‑91 (MQ=255)                                                                                                                                                                                                                            gTAATAATGTAAGAATGTGCggtgatgctgccaacttactgatttag                                                                                                                                                                                                                                                         <  2:131128‑M2/47‑28 (MQ=255)                                                                                                                                                                                                                            gTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTAc                     >  1:149298/1‑275 (MQ=255)                                                                                                                                                                                                                              aataatGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAActc                                                                                                                                                                                                                         >  1:654330/1‑77 (MQ=255)                                                                                                                                                                                                                               ataatGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTATCTCGTTAGCTGCGCTTTTATTAAActc                                                                                                                                                                                                                         >  1:625135/1‑76 (MQ=255)                                                                                                                                                                                                                                taatGTAAGAATGTGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagct                                                                                                                                                                                      >  2:85087‑M2/1‑16 (MQ=255)                                                                                                                                                                                                                                taatGTAAGAATGTGCggtgatgctgccaacttactgatttagtgta                                                                                                                                                                                                                                                     >  1:131129‑M2/1‑16 (MQ=255)                                                                                                                                                                                                                                  atGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTgcg                                                                                                                                                                                                                     <  2:654319/77‑1 (MQ=255)                                                                                                                                                                                                                                   tttAAGAATGGGTGTAGCCGTGTTTTAAGTTAAAAAATTCGCTTTCTCGTTAGCTCCTCTTTTATTAAACTCTGCGCGATGATTATTGGCGAAGAAATTGCCTTCAAAATAAATTAGCTTCCTGTGCCATGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGAt               <  2:325118/272‑1 (MQ=255)                                                                                                                                                                                                                                   tGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTgc                                                                                                                                                                                                                                        >  2:558939/1‑57 (MQ=255)                                                                                                                                                                                                                                   tGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTgcg                                                                                                                                                                                                                     <  2:625124/76‑1 (MQ=255)                                                                                                                                                                                                                                    gTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAAc                                                                                                                                                                                                                           >  1:519244/1‑69 (MQ=255)                                                                                                                                                                                                                                       aGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCtt                                                                                                                                                                                                                                    <  1:558950/57‑1 (MQ=255)                                                                                                                                                                                                                                        gAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTg                                                                                                                                                                                                                       <  2:519233/69‑1 (MQ=255)                                                                                                                                                                                                                                         aaTGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCt                                                                                                                                                                                                                                          >  1:16457/1‑49 (MQ=255)                                                                                                                                                                                                                                           tgtgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGa                                                                                                                                                        >  2:656073/1‑129 (MQ=255)                                                                                                                                                                                                                                             tgCggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                                                                                                                                                        <  2:109185‑M2/47‑45 (MQ=255)                                                                                                                                                                                                                                             tgCggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                                                                                                                                                        <  2:485677‑M2/47‑45 (MQ=255)                                                                                                                                                                                                                                             tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTgcgc                                                                                                                                                                                                                                      <  2:16457/49‑1 (MQ=255)                                                                                                                                                                                                                                             tgCTTAACCGTGGTTTCAGCTACAAAATACGCTTTCTCGTTAGCTGCGCTTTTATTAAActc                                                                                                                                                                                                                         >  1:284413/1‑62 (MQ=255)                                                                                                                                                                                                                                              gCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTATCAACCt                                                                                                    >  1:413138/1‑178 (MQ=255)                                                                                                                                                                                                                                               cggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgta                                                                                                                                                                   >  1:318516‑M2/1‑1 (MQ=255)                                                                                                                                                                                                                                               cggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact                                                                                                                                                                                   <  2:651067‑M2/98‑98 (MQ=255)                                                                                                                                                                                                                                               cTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTc                                                                                                                                                    <  1:656084/129‑1 (MQ=255)                                                                                                                                                                                                                                               cTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTGTCTGTCTGGTGNTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATAACAGGCGGGCATTGATTGGGTTGCTACTTCGATGACCGCGTATCTg  >  1:602954/1‑275 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                   CGTTAATAAGAGAGAATAGAGAGAGATTCAAATTTTCCAGCATAACTTCCCGACGCAAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTG  >  CP009273/878802‑879314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.