Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | CP009273 | 1,613,458 | IS2 (+) +5 bp | 100% | coding (82‑86/435 nt) | marR → | transcriptional repressor of multiple antibiotic resistance |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 1462167 = | NA (NA) | 27 (0.990) | 22/226 | NT | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
? | CP009273 | 1613458 = | 0 (0.000) | coding (82/435 nt) | marR | transcriptional repressor of multiple antibiotic resistance | |||||
* | ? | CP009273 | = 1613462 | 0 (0.000) | 17 (0.630) | 14/222 | NT | 100% | coding (86/435 nt) | marR | transcriptional repressor of multiple antibiotic resistance |
? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region |
CATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATC > CP009273/1613258‑1613713 | cATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatatccagacaaccaaaatcacta > 2:182792‑M1/1‑205 (MQ=255) gAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaatatcacttaaat < 1:182796‑M1/245‑45 (MQ=255) aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCAGCTGGATATTACcg > 2:553072‑M2/134‑170 (MQ=255) gttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCAGCTGGATATTACCGCGGc < 1:553083‑M2/41‑1 (MQ=255) ttcgagcattataacgaatggcatccgcatagtgcgctgggttctcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATTAACGAGTATCTGTCTCCGCTGGACATTACCGCGGCACAGTTTAAgg > 1:368922‑M2/129‑180 (MQ=255) ggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggc > 1:141193‑M1/1‑131 (MQ=255) ataacgaatggcatccgcatagtgctctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTgg < 1:359683‑M2/154‑1 (MQ=255) tCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccc > 1:533382‑M1/1‑121 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctg < 2:533371‑M1/132‑16 (MQ=255) tGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCAATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccct > 1:78605‑M1/1‑116 (MQ=255) aCTAATTACTTGCCATGGCAACTAATGTGAAAACTACCAGCGATCGATTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagccgggccccctgtaa < 2:78605‑M1/130‑19 (MQ=255) tgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagggataacagatgtctgggaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGATCTATCCGCTGCGCGGCGTGCATTACTCCGGTTGTACTGCAAAAGGTATGGTCGGTAGACCTGGGAg > 2:93495‑M2/97‑223 (MQ=255) cAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTg > 1:229713/1‑97 (MQ=255) ctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACt < 1:93495‑M2/131‑1 (MQ=255) tgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGtc > 2:207861‑M2/92‑111 (MQ=255) gCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTta < 2:229709‑M1/97‑3 (MQ=255) ttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCg < 1:207865‑M2/24‑1 (MQ=255) cgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTgcg > 1:175048‑M2/80‑152 (MQ=255) ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGa > 2:588790‑M2/78‑203 (MQ=255) acgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCgcggc < 2:175044‑M2/77‑1 (MQ=255) gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCAc < 1:588801‑M2/130‑1 (MQ=255) gCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatct > 2:552288‑M1/1‑73 (MQ=255) tCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctccag < 1:552299‑M1/93‑25 (MQ=255) ggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTgcgc > 2:16831‑M2/44‑117 (MQ=255) ggttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTgt > 1:24614‑M2/44‑155 (MQ=255) gggtaagtgctaacagatgtctggaaatataggggcaaatcaaCTGCTTAACGAGTATCTGTCTCCGCTAGATATTACCGCGGCCCAGTTTAAGGTGATCTGCTCTATCCGCTGCGCGGCGTGTATTACTCAGGTAGAACTGAAAAAGGTATTgtcggtc > 2:72571‑M2/44‑160 (MQ=255) ttaagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAgg > 2:499024‑M2/42‑93 (MQ=255) aagtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCgcggcg < 1:16831‑M2/78‑1 (MQ=255) agtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGtc > 2:613407‑M2/39‑58 (MQ=255) agtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTgcg > 1:505087‑M2/39‑111 (MQ=255) gtgataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCGCCGCTGCATATTACCGCGGCACAGTTTACGGtgct < 1:499033‑M2/56‑1 (MQ=255) cTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgt > 1:8055‑M1/1‑39 (MQ=255) ataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCg < 1:613418‑M2/24‑1 (MQ=255) ataacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCgcggc < 2:505077‑M2/77‑1 (MQ=255) aacagatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTgt > 1:89626‑M2/33‑144 (MQ=255) aTCCATATGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtacca < 2:8055‑M1/169‑135 (MQ=255) gatgtctggaaatataggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTgtcggt < 2:89626‑M2/116‑1 (MQ=255) atGGTTAATCGGAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgaaggtctccctcgttgcccggcaacat > 2:190906‑M1/1‑29 (MQ=255) atGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctc > 2:621151‑M1/1‑29 (MQ=255) tGGTTAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaa > 1:526104‑M1/1‑28 (MQ=255) ttAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtg < 1:190910‑M1/237‑213 (MQ=255) tactcagAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggcaggagcaacgcagccggcgtaccacacagcaaaagatcgcagttgttcagcagagatttgaaccgtggaggacggactccctgggacgccggcaaccaggtggagcagctagccggttatttctctggcgttctcaaccac > 2:4859‑M1/4‑24 (MQ=255) tAATCAGAAGAAAGATCGCCTGCTtagactggccccctgaatctccagacaaccaatatc < 2:526093‑M1/60‑37 (MQ=255) taggggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTggg > 1:244734‑M2/15‑139 (MQ=255) ggcaaatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCa < 2:244730‑M2/129‑1 (MQ=255) aatccaCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTg > 1:239331‑M2/7‑138 (MQ=255) caCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGAccc < 2:239327‑M2/136‑1 (MQ=255) aCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACt > 1:188126‑M2/2‑210 (MQ=255) | CATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATC > CP009273/1613258‑1613713 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |