New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	310940 =	14 (0.750)	11 (0.600) +TC	11/256	NT	33.2%	intergenic (+1/‑62)	eaeH/insE1	pseudogene, attaching and effacing protein homology;factor; Not classified/IS3 transposase A
	?	CP009273	831792 =	31 (1.650)					intergenic (+126/‑15)	ybiB/ybiC	putative family 3 glycosyltransferase/putative dehydrogenase

TGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAAC  >  CP009273/310724‑311145                                                                                                                                                                                                                         |                                                                                                                                                                                                              tggctggAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGACGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAcc                                                                                                                                                     >  2:177306/1‑274 (MQ=255)                                              tgccaataccatgtgaatcatgccctgccaggtttgccgcgattaaatgatcggcaactaatttcgcttcttgttcctcgctacccatctgacgaaatacagcctgaataaaactgtgcagcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTTTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACAAGTAAAAAACCCcgtaaaaag                                                                                                        <  1:5662‑M1/104‑4 (MQ=255)                                                    tGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGc                                                                                                                                                                                    >  2:379738/1‑193 (MQ=255)                                                        tGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGATCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAg                                                                                                                                                                                <  1:379744/193‑1 (MQ=255)                                                         tgtgaatcatgccctgccaggtttgccgcgattaaatgatcggcaactaatttcgcttcttgttcctcgctacccatctgacgaaatacagcctgaataaaactgtgcagcgtctgagcatcaaagcgatgaccactttccatggttaactcctctttgaTCTTACCCAGCAATAGTGGACACGCGGCTAATTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAGAAAAAAAGTATCAACCAGTAAAANACAACGTAAACAGCATGCGCctc                                                                                              <  2:238364‑M1/114‑2 (MQ=255)                                                                                tgccgcgattaaatgatcggcaactaatttcgcttcttgttcctcgctacccatctgacgaaatacagcctgaataaaactgtgcatcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGc                                                                      <  1:58156‑M1/138‑1 (MQ=255)                                                                                                       cgcAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                                                                                                    >  1:14093/1‑158 (MQ=255)                                                                                                           aGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt                                                                                                                                                                <  2:14093/158‑1 (MQ=255)                                                                                                            ttcgcttcttgttcctcgctacccatctgacgaaatacagcctgaataaaactgtgcagcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCCTGCTGAACGCATCGGTGTTACTGCCGc                                          >  1:238369‑M1/110‑275 (MQ=255)                                                                                                                                      gATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAAt                <  1:177311/275‑1 (MQ=255)                                                                                                                                       aTGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGC‑TTCGCCTGAATTTCGCAGTAAAACCCTTAAGCTTCCTGAACCCATCGGTGTTAAGGCCGCAGCCCGTCAACTCCCCCTGTATGaa                 >  2:178223/1‑272 (MQ=18)                                                                                                                                         acgaaatacagcctgaataaaactgtgcagcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg                                                                                                                                                                            <  1:46932‑M1/36‑1 (MQ=255)                                                                                                                                             aatacagcctgaataaaactgtgcagcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                                                                                                        >  2:46931‑M1/77‑116 (MQ=255)                                                                                                                                                   gcctgaataaaactgtgcagcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa                                                                                                                                                                         <  2:317625‑M1/39‑1 (MQ=255)                                                                                                                                                    gTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTAACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGC‑TTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAAc  <  1:178228/274‑1 (MQ=255)                                                                                                                                                       gaataaaactgtgcagcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc                                                                                                                                                                     >  1:317631‑M1/67‑109 (MQ=255)                                                                                                                                                          tAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGTTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa                                                                                                                                                                         >  1:233344/1‑102 (MQ=255)                                                                                                                                                              gATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGTTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc                                                                                                                                                                     <  2:233339/102‑1 (MQ=255)                                                                                                                                                                  tgcagcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGc                                                                                                                                                                                                     <  1:76826‑M1/11‑1 (MQ=255)                                                                                                                                                                      gcgtctgagcatcaaagcgatgaccactttccatggttaactcctgtttgaTCTTACCCAGCAATa                                                                                                                                                                                                 >  2:76823‑M1/52‑66 (MQ=255)                                                                                                                                                                      gcgtctgagcatcaaagcgatgaccacttgccatggttaactcctgtttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGGAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg                                                                                  >  1:353070‑M1/52‑177 (MQ=255)                                                                                                                                                                                   cATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                                                                                                                 >  1:181085/1‑101 (MQ=255)                                                                                                                                                                                       cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc                                                                                                                                             <  2:181080/101‑1 (MQ=255)                                                                                                                                                                                                ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                                                                                                        >  1:165435/1‑65 (MQ=255)                                                                                                                                                                                                    ggTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                                                                                                    <  2:165430/65‑1 (MQ=255)                                                                                                                                                                                                                        aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                                                                                                              <  2:40225‑M1/66‑1 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                              TGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAAC  >  CP009273/310724‑311145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.