New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	17 (0.910)	19 (1.010)	16/260	NT	54.3%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	15 (0.800)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

AGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCG  >  CP009273/360054‑360473                                                                                                                                                                                                                                         |                                                                                                                                                                                            aGTGCAGGTGCTCCGATGATAAGCTGTCAAACAGGAGACTTCCGATCCCCAATTACTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCGGGCAGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGTCGAGCGTTCACCGACAAACAACAGATAAATCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctc                                                                                                                                                   >  1:212133‑M2/1‑233 (MQ=255)                                        ttCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTTCGGGCCGGTGCTTCGCAACGTTCAAATCCGCTCCCCGCGGGTTTGTCCTACTCAGGCGAGCGTTCACCGACAAACTACAGATAAAACGAAAGGCCCAGTCTGTCGACTGAGCCTGTCGTTTGATCTGATGCCTGGGGAATTacttc                                                                                                                                                                                        <  1:215828‑M2/199‑6 (MQ=255)                                            gctccCCAATTCCTGGCAGTGTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACCAACAACAGATAAATCGAAAGGCCCTGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctgg                                                                                                                                                                                    >  2:215823‑M2/3‑190 (MQ=255)                                                                               tGCCCGCCACCCTCCAGGCCGTTGCTTCGAAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattc                                                                                                                                                                                        <  1:284750‑M2/160‑6 (MQ=255)                                                                               cgatagCCACCCTCTGGTCAGTGGCTTGCCAACGTTCAAAGCCGCTCCCGTCGTATTTGTGCTACGCAGGAGTGCGTTCACATACAAACCACAGCTAAAACGAAAGGCACAGTCTTTCGACTGAGCTTTTCGGTTTATTTGATGCCTGGGGAATTGGGAATTAATTCGTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGTAGATCCAGCCGCCCAGGCCTGCGAGGCCTGCGTGCCCCTCTATGTCGGCcgcg                                                                     <  2:348648/270‑1 (MQ=255)                                                                                   cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctgg                                                                                                                                                                                    >  2:284744‑M2/1‑151 (MQ=255)                                                                                                    ttGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggc                                                                                                             <  1:341985‑M2/214‑81 (MQ=255)                                                                                                        ttCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggat                                                                                                         >  2:341979‑M2/1‑130 (MQ=255)                                                                                                         tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattc                                                                                                                                                                                        <  2:215864‑M2/134‑6 (MQ=255)                                                                                                             aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctgg                                                                                                                                                                                    >  1:215869‑M2/1‑125 (MQ=255)                                                                                                                                        tggctttcTCAGGAGGGCGTTCACCGACTAACAACAGATAAAAGGAAAGGCCCATTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAAGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTcc            <  1:359851/268‑1 (MQ=255)                                                                                                                                          tCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgg                                                                                                                                                <  1:40916‑M2/141‑46 (MQ=255)                                                                                                                                              aCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccg                                                                                                                                            >  2:40915‑M2/1‑92 (MQ=255)                                                                                                                                                   ggAGAGCGTTCACTGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCg  <  1:139039/274‑1 (MQ=255)                                                                                                                                                         cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctcc                                                                                                                                                  <  2:315777‑M2/124‑44 (MQ=255)                                                                                                                                                         cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCcg                                                                                            >  2:70122/1‑178 (MQ=255)                                                                                                                                                             cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggc                                                                                                                                              >  1:315783‑M2/1‑77 (MQ=255)                                                                                                                                                             cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTg                                                                                        <  1:70125/178‑1 (MQ=255)                                                                                                                                                              aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACACCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCAc                                                                                                 >  2:244583/1‑168 (MQ=255)                                                                                                                                                                  acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACACCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGccc                                                                                             <  1:244588/168‑1 (MQ=255)                                                                                                                                                                             aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgt                                                                                                                                           <  1:388496‑M2/111‑51 (MQ=255)                                                                                                                                                                             aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgt                                                                                                                                           >  2:388490‑M2/1‑61 (MQ=255)                                                                                                                                                                                 aaCGAAATGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgaca                                                                           >  1:65357‑M2/1‑57 (MQ=255)                                                                                                                                                                                       aGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgg                                                                                                                                                <  2:259244‑M2/96‑46 (MQ=255)                                                                                                                                                                                       aGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCcgcg                                                                                          >  1:200984/1‑150 (MQ=255)                                                                                                                                                                                           ccAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccg                                                                                                                                            >  1:259249‑M2/1‑47 (MQ=255)                                                                                                                                                                                           ccAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGcc                                                                                      <  2:200979/150‑1 (MQ=255)                                                                                                                                                                                                   tCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAg                                                                                                                                                                    >  1:166728/1‑64 (MQ=255)                                                                                                                                                                                                       cTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGcc                                                                                                                                                                <  2:166723/64‑1 (MQ=255)                                                                                                                                                                                                         gAGCCTGTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcc                                                                                                                                                             <  2:236008‑M2/65‑33 (MQ=255)                                                                                                                                                                                                            ccTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAAt                                                                                                                                   >  1:20308/1‑88 (MQ=255)                                                                                                                                                                                                             cTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgcc                                                                                                                                                         >  1:236013‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                tCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCa                                                                                                                               <  2:20307/88‑1 (MQ=255)                                                                                                                                                                                                                     ttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAAt                                                                                                                                   >  1:351684/1‑79 (MQ=255)                                                                                                                                                                                                                      tATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatt                                                                                                        <  1:169892‑M2/105‑86 (MQ=255)                                                                                                                                                                                                                         ttGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCa                                                                                                                               <  2:351678/79‑1 (MQ=255)                                                                                                                                                                                                                          tGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtc                                                                                                    >  2:169887‑M2/1‑16 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                            AGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCG  >  CP009273/360054‑360473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.