Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	4532701	4532745	45	2 [1]	[1] 2	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)

CTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCA  >  CP009273/4532663‑4532704                                      |     cTCGACGCATCTTCCTCATTCTTCTCTCCAAAAaccac      >  2:338252/1‑38 (MQ=255)     aCGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCa  <  1:338258/38‑1 (MQ=255)                                      |     CTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCA  >  CP009273/4532663‑4532704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑