Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 1428865 1428889 25 3 [1] [1] 2 ynaE/ttcC cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related

GTTTTTATCTGAAGAAGAAAAATATCAAGGTGATATAGC  >  CP009273/1428886‑1428924
    |                                  
gTTTTTATCTGAAGAAGAAAAATATCAAGGTGata      >  1:3056/1‑35 (MQ=40)
    ttATCTGAAGAAGAAAAATATCAAGGTGATATAGc  <  2:3056/35‑1 (MQ=40)
    |                                  
GTTTTTATCTGAAGAAGAAAAATATCAAGGTGATATAGC  >  CP009273/1428886‑1428924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: