New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 3824404 | 40 (1.170) | 11 (0.340) | 7/302 | 1.7 | 21.7% | coding (588/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein |
? | CP009273 | = 3824452 | 42 (1.310) | coding (636/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein |
TGCGTGATATGGCGTTTAATAGCCCGAATAGCGAATGGAAACTGAGCGCGCAGCGGGTAAATGGCGGCGTAGTTCCGTGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGACCTCGATCTCAGCTTGCGCAACATGACCTTCA > CP009273/3824193‑3824663 | tGCGTTATTTTGCGTTTAATAGTCCGACTATCTAATGGAAACTGAGCGCGCAGCGGGTAAATGGCGGCTTAGTTCCGTGGTCACCAAAAGNCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACTGTAACCGGAAACGTGCAGCGTAACGCCGa < 1:494542/274‑1 (MQ=255) gCGTTTAATAGCCCGAATAGCGAATGGAAACTGGGCGCGCAGCGGGTAAATGGCGGCGTAGTTCCGTGGTCACCAAAAGCCGGTAAAGGGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTAGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCa < 1:387024/275‑1 (MQ=255) aaTAGCGAATGGAAACTGAGCGCGCAGCGGGTAAATGGCGGCGTAGTTCCGTGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCCATGATGTTACTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATAGCGTTACGCTGACTAACCTGGGTGACGACATCGCCTGCGGGACATTAACCGGAAACGCGGAACGAAACCGAGACGGCAGGTGGCAAGTGGAAAACATgag > 1:208419/1‑273 (MQ=255) aaTAGCGAATGGAAACTGAGCGCGCAGCGGGTAAATGGCGGCGTAGTTCCGTGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCCCAGCGTAAAGCCAACGGCAGCTAGCAAGTGAAAAACCGgcg > 1:302749/1‑275 (MQ=255) aGCGCGCAGCGGGTAAATGGCGGCGTAGTTCCGTGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTg > 2:262652/1‑177 (MQ=255) cgcAGCGGGTAAATGGCGGCGTAGTTCCGTGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTg < 1:262656/177‑1 (MQ=255) gcgTAGTTCCGTGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTACCGCCGACGGCAGCTGGAAAGTGCAAAACCCGCGCGTGGCGGCTATATGTCTCCAAAGAGaaaaaatgccaac > 2:100123/1‑266 (MQ=255) tGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATAGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAAACGGAAACGCGCAGCGTAACGCCGACGGCAACTGGCAAGTGGAAAACCGGACCAGGGCGGATATGAGTCTACACAGCGAAAAAACGCCAAcctgtcgcttat > 2:279207/1‑264 (MQ=255) ggTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACCTTAACCGGAAACGCGCAGCGTAACGCTGACGGCAGCTGGCAAGTGGAAACCCTGCGCCTGGCGGATATCCGTCTACAAAGCGCAAAATAGCTAACCGACTTCTTTGCGACATTACGCTCTGCACCGTCGTTGCa > 1:347545/1‑275 (MQ=255) ggTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACGAGAAACGCGCANCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACCTCTTTGAGCCAATAAGCTCTGTCCcgtacttgaa > 1:592179/1‑268 (MQ=255) cgcAGATTCAGTTTAGTGCAGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGGTTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCACTTTCCCGTCGTTGCAGATTGGTCGc > 1:549318/1‑275 (MQ=255) cAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGaaa > 2:261245/1‑140 (MQ=255) cAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCAGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAACTGGCAAGTGGAAAACCTGCGCATGGCGGATATCCGGCTACAAAACGAACAATCGCTAAACGAACTCTTTGCGACAACAAGCTCTGTCAAGTCGTTGCAGATTGGACGccg > 1:194035/1‑274 (MQ=255) ttCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAcgcg < 1:261249/140‑1 (MQ=255) gTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcg > 2:460977‑M1/1‑83 (MQ=255) gTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcg > 2:234319‑M1/1‑83 (MQ=255) gTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcg > 1:530771‑M1/1‑83 (MQ=255) tGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACATGCGCATGGCg > 2:425214/1‑178 (MQ=255) cGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtt < 2:530763‑M1/85‑7 (MQ=255) cGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtt < 1:234322‑M1/85‑7 (MQ=255) cGGATCGCTTTCGCTCAATGATGTTCCTGCCAACAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcac < 1:460983‑M1/117‑39 (MQ=255) ggATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGata < 1:425219/178‑1 (MQ=255) cTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCa > 2:317954/1‑163 (MQ=255) cGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGc < 1:317958/163‑1 (MQ=255) gCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcg > 1:454947‑M1/1‑67 (MQ=255) aaTGATGTTCCTGCCAACAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcac < 2:454942‑M1/101‑39 (MQ=255) gTTCCTGCCACCAATTGACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTggg < 1:100124/274‑1 (MQ=255) gCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACAt > 1:550915/1‑85 (MQ=255) gCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTG > 2:479721‑M1/1‑51 (MQ=255) ccaATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAAc < 2:550906/85‑1 (MQ=255) ccaATGTACTGATTGAAGGCACTATTCGTCACGATAGCGTGACGCTGACTa < 1:479728/51‑1 (MQ=255) ggtGTACTGATTGTAGGCAGTATTGATACCGCGCGCGTTACGCTGACTGACCGTGGTGCCCGCATCGCCCGCGGGACATAAACCGGAACCGCGCAGCGTAACGCCGACGGCAGCGGGCAAGTGGAAATCCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCTGTCGTTTCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGACCt < 2:194033/273‑1 (MQ=255) gATTGAATGCAGTATTGATAACGATCGCGTTACGCTGACTa > 1:566482/1‑41 (MQ=255) aTTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACCAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGt > 1:252398/1‑191 (MQ=255) aaGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACCAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCcg < 2:252394/191‑1 (MQ=255) aGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCg > 1:141443/1‑127 (MQ=255) aGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTTCAGACTGGTCTCCTGGAAGTGATCGATGCTCGt > 2:472060/1‑229 (MQ=255) aGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACNTCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGAGCGCTTGGAAGTGATCGATGCTCGTTTGc < 1:472067/229‑1 (MQ=255) aGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGata < 2:141442/127‑1 (MQ=255) gTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGt > 2:11165/1‑181 (MQ=255) tATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGACGTGATCGAGGCTCGTTTGCAATGTCCGGACTGTACGTTGATCGCCCTCGATCTCAGCTTCCGAAACa > 1:545085/1‑275 (MQ=255) tGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCcg < 1:11166/181‑1 (MQ=255) aaCGATCGCGTTACGCTGcgcgtttccggttaatg > 1:233302‑M1/1‑18 (MQ=255) aaCGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGctct > 2:64989/1‑171 (MQ=255) gATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcg > 2:592691‑M1/1‑15 (MQ=255) gATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCcg > 2:849/1‑174 (MQ=255) gATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGCAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGGCCTCGAGCTAAGGTTGCGCACCATGACCGTcc > 2:148821/1‑273 (MQ=255) aTCGCGTTACGCTGcgcgtttccggttaatgtccc < 2:233299‑M1/35‑22 (MQ=255) aTCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTcc < 1:64990/171‑1 (MQ=255) tCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTgcg > 1:107907/1‑102 (MQ=255) gcgTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcac < 1:592700‑M1/49‑39 (MQ=255) gcgTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCcgtcgt < 1:849/174‑1 (MQ=255) gTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATg < 2:107906/102‑1 (MQ=255) | TGCGTGATATGGCGTTTAATAGCCCGAATAGCGAATGGAAACTGAGCGCGCAGCGGGTAAATGGCGGCGTAGTTCCGTGGTCACCAAAAGCCGGTAAAGTGCTGGGTACGAAGGCGCAGATTCAGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACAAAGCGAAAAATCGCTAACCGACTTCTTTGCGCCATTACGCTCTGTCCCGTCGTTGCAGATTGGTCGCCTGGAAGTGATCGATGCTCGTTTGCAAGGTCCGGACTGGGCGGTGACCGACCTCGATCTCAGCTTGCGCAACATGACCTTCA > CP009273/3824193‑3824663 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |