New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 47540 | 32 (0.930) | 5 (0.160) | 4/300 | 2.3 | 15.0% | coding (295/531 nt) | kefF | potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent |
? | CP009273 | = 47670 | 27 (0.850) | coding (425/531 nt) | kefF | potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent | |||||
Rejected: Frequency below/above cutoff threshold. |
TTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTTACGGTCATGGCGGCACGGCGCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTCAGGCGCTGATTTATCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCGATGCCGAATCTATTCTGCACTTTGC > CP009273/47454‑47944 | ttCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTTACGGTCATGGCGGCACGGCGCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAACTTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTCAAGGCGACGGCAATCTACTGCGGGCTGAACTAGCTGCCACCGTTTGCCCTGCCCTGCACTTTTATTTGTGCCGACGAAATCCTTGAAGTGTAGGcgcg > 1:260189/1‑274 (MQ=255) gttGGAGCGATAAAGGTTTCGCCCACGGCTGGGCGTACGGTCATGGCGGCACGGGGCTGGATGGCAAGCGATTGCTGTGGGCGGTGACGACCGGGGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTctg < 2:604110/274‑1 (MQ=255) taGTTTTCTCCGACGGCTGGGCTTACGGTACGGGCGGCAGGGGGCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCAGGGAAAGCCATTTTGAAATTGGTGTGCATCCGGGCATTGATTTTCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGCAATGGCag < 1:590282/274‑1 (MQ=255) ttCTCCCCCGTCTGGGCTTAGGGTCATGGCTGCACGGCTCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGCTGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGc < 1:194268/275‑1 (MQ=255) ggcggcACGGGTCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAACTTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTc < 1:250142/275‑1 (MQ=255) gCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgca < 1:98737‑M2/148‑13 (MQ=255) aCATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCAtgcactgc < 2:98736/148‑1 (MQ=255) tGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCTAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTACGGCGCTGCTTTCTCCCGGTTCgtgcgc > 2:248615/1‑270 (MQ=255) ggggggggggagtacCGGCGGCGGGGAACGATGTTTTGGAAGTGGGGCGCTTCCGTGCTTGGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTCAGGCGCTGATTTATCTCGGTTCGGCAgcgc < 2:291659/260‑1 (MQ=255) ggCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGACCTGGCTGCCACCgtttgccatgccgcgccgtgccgccatgaccgtaagcccagccgtgggagaacactttatcgatccaaagtttgaggagcggaggactgctgtac < 2:468075‑M2/215‑96 (MQ=255) ggCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgcagcgccgtgccgccatgaccgtaagccca < 1:439128‑M2/160‑41 (MQ=255) ggCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCCGGAGGGCCCTCCTGGATAGCCATACGCTGCTTCCGGCGCTGAGTTATCTTGGTTCGGcc > 1:291663/1‑265 (MQ=255) gTGACGACCGGCGGCGGGGAAANCCATTTTGNAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgcagcgccgtgccgccatgaccgtaagcccagccgtgggagaaaactttatcgatgcaaagttttaggagcggaggaatgctgtaccact > 1:468082‑M2/1‑116 (MQ=255) gTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgcagcgccgtgccgccatgaccgtaagcccagccg > 2:439123‑M2/1‑116 (MQ=255) gggAAAGCCATTTTGAAATTGATGCGCAGCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTc > 1:487699/1‑159 (MQ=255) aaGCCATTTTGAAATGGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACta < 2:487692/159‑1 (MQ=255) ttttGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtt < 1:358524‑M2/93‑4 (MQ=255) ttGAATTTGGTGCGTGTGCGGGCTTTGAGGGGCTGTCGCAGCCGCGACTGGCGACGGCTATCTCGTGCGGGCTGATCTGGGTGCGCGCGTGTGCCATGCACGGCACAGTTATTGGTGACGACGAAACCCACGAAGGGCAGGCGCGTCACTATAAGAAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCAGACGCTGAGTCAGGCGCTGATTTATCTCGGTTCGGCAGCGCTGATTGTACCCAGTGCGGTACGTCTTGGTCTGGGAt < 2:115717/274‑1 (MQ=255) gAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgcc > 2:358520‑M2/1‑86 (MQ=255) aTTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAgg > 1:112799/1‑136 (MQ=255) gTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAgg > 2:121461/1‑132 (MQ=255) gTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGcgcg < 2:112798/136‑1 (MQ=255) gTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACtata > 1:6246/1‑144 (MQ=255) gTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACtat > 2:308064/1‑143 (MQ=255) gcATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGcgcg < 1:121462/132‑1 (MQ=255) gcATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGc < 1:308068/143‑1 (MQ=255) gcATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCa < 2:6245/144‑1 (MQ=255) gCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAAc > 2:475371/1‑128 (MQ=255) tCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTct < 1:475378/128‑1 (MQ=255) gCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgcactgcacctttatttgtgacgacgaaaccctcgaagggcaggcgtgggagaaaactttatcgatccaaagtttgaggagcggaggaatgctgtaccactgcatcggatgctgccagacgatcagatcggcgcgagacagcgcctcctgctcggcggcaatatcgatattgaagtcaggatagagttgataaagagagcgaatttcgacgccttccagcgtccttgc > 1:230537‑M2/1‑38 (MQ=255) aCGGCAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgcca < 2:178882‑M2/43‑9 (MQ=255) ggCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAg > 1:125213/1‑100 (MQ=255) cAATCTACTGCGGGCTGAACTGGCTGCCACCgtttgccatgca > 1:178884‑M2/1‑31 (MQ=255) aTCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAAc < 2:125212/100‑1 (MQ=255) cACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGcc > 2:195472/1‑98 (MQ=255) cGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGt > 2:207658/1‑59 (MQ=255) cGTGTGCCATGTACTGCACCTTTATTTGTGGCGACTAAACCCTCGAAGGGCAGGAGCTTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCACATCATGGATAGCCATACGCTGATTCAGGCGCTGATTTGTCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGAGCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCGATGCCGAATCTATTCTGCACTTTGc < 1:248619/275‑1 (MQ=255) | TTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTTACGGTCATGGCGGCACGGCGCTGCATGGCAAACATTTGCTGTGGGCGGTGACGACCGGCGGCGGGGAAAGCCATTTTGAAATTGGTGCGCATCCGGGCTTTGATGTGCTGTCGCAGCCGCTACAGGCGACGGCAATCTACTGCGGGCTGAACTGGCTGCCACCGTTTGCCATGCACTGCACCTTTATTTGTGACGACGAAACCCTCGAAGGGCAGGCGCGTCACTATAAGCAACGTCTGCTGGAATGGCAGGAGGCCCATCATGGATAGCCATACGCTGATTCAGGCGCTGATTTATCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCGATGCCGAATCTATTCTGCACTTTGC > CP009273/47454‑47944 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |