New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 354947	37 (1.080)	5 (0.160)	5/294	2.1	13.1%	coding (438/660 nt)	cynT	carbonic anhydrase
	?	CP009273	= 355075	33 (1.060)					coding (566/660 nt)	cynT	carbonic anhydrase
Rejected: Frequency below/above cutoff threshold.

TGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCAGCAAAGCTAAAAAAGATCTCTCATTTGCCGAGATTGCCGACGGCACCGGTCTGGCAGAAGCCTTTGTAACCGCG  >  CP009273/354860‑355334                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                    tgccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGGGCTCGAAGAGGGGCGGATCGCCCTGCANGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGttt                                                                                                                                                                                                          >  1:525900/1‑275 (MQ=255)   ccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGAGTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGCCATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGATTGCTGCAATGGCCGCTAACCCTCGCGtgtg                                                                                                                                                                                                         >  1:14622/1‑274 (MQ=255)                                                                   cGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCGCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTccacc                                                                                                                                         <  1:169272/274‑1 (MQ=255)                                                                         aCCGTCAAAAGGTGCGGCGATGTTACGTGAAATCGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCATGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGAtt                                                                                                                                   <  1:311883/274‑1 (MQ=255)                                                                            gTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGCAGTTCCACCATGATTCAGt                                                                                                                               <  1:544558/275‑1 (MQ=255)                                                                                                      aaaaCGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGc                                                                                                                                                                                                                                  >  1:373343/1‑150 (MQ=255)                                                                                                          cGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACt                                                                                                                                                                                                                              <  2:373339/150‑1 (MQ=255)                                                                                                          cGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTAtt                                                                                                                                                                >  1:105687/1‑212 (MQ=255)                                                                                                                                  ccactcccaccactcGGGGCGCGCGGCGCTCGAGGGCGGGCGGACCTCCCTGCACGCCTTGGTCTACGACATTAAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCGGTTTGTGCCACTGGCCGCTCATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCAGCa                                                                         <  2:14621/262‑1 (MQ=255)                                                                                                                                                cGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATcgcagcttttgacggtaaatcggaatgcgggcgcgcctcattaacgacgcgggctgaatcggcataacgcagccagtgggagacggcaggcatatggtccatgcactgacagctggcaatggcggtcatcgcgccacagttggaatgaccacaaatcacaatgtcagatacccgaagcgcagcgacggcatactccaccga                                                            <  1:282980‑M2/274‑202 (MQ=255)                                                                                                                                                            cgcTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACCTTGAAAGCGGCAGCATcgcagcttttgacggtaaatcggaatgcgggcgcgcctcattaacgacgcgggctgaatcggcataacgcag                                                                                                                                                                                             <  2:71375‑M2/133‑73 (MQ=255)                                                                                                                                                               tCGCAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCa                                                                                                                                                       <  2:270368/168‑1 (MQ=255)                                                                                                                                                                cGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATcgcagcttttgacggtaaatcggaatgcgggcgcgcctcattaacgacgcgggctgaatcggcataacgcagccag                                                                                                                                                                                         >  1:71376‑M2/1‑57 (MQ=255)                                                                                                                                                                        ggCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTc                                                                                                                                                                                                                >  2:251096/1‑102 (MQ=255)                                                                                                                                                                         gCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTa                                                                                                                                                                        >  1:380557/1‑141 (MQ=255)                                                                                                                                                                            gATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGt                                                                                                                                                                                                            <  1:251100/102‑1 (MQ=255)                                                                                                                                                                             aTCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCt                                                                                                                                                                    <  2:380553/141‑1 (MQ=255)                                                                                                                                                                               cGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCAGc                                                                          >  1:306780/1‑229 (MQ=255)                                                                                                                                                                                  ccTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTTCCGATACCATTTTGCTCAGCAAAGCCAAAAAAGATCTCGCCTTTGCCGAGACTGCCTACGGAAcagcag                         >  2:8630/1‑270 (MQ=255)                                                                                                                                                                                           cTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTc                                                                                                                                                                                                                >  2:374038/1‑83 (MQ=255)                                                                                                                                                                                           atggataaaaaaaaTTGAAAGAGGTAGCTTCGCAGCTTTTGGCGGAGCACCCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCAGCAAAGCTAAAAAAGATCTCTCATTTGCCGAGATTGCCGACGGCACCGGTCTGGCAGaa                 <  2:525892/261‑1 (MQ=255)                                                                                                                                                                                            tGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCa                                                                            >  1:342699/1‑214 (MQ=255)                                                                                                                                                                                               gTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGt                                                                                                                                                                                                            <  1:374042/83‑1 (MQ=255)                                                                                                                                                                                                tCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCAGCaa                                                                        <  2:342695/214‑1 (MQ=255)                                                                                                                                                                                                         ttGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATTCCATTTTGCTCAGCAAAGCTAAAAAAGATCCCTCATTTGCCGAGATTGCCGCCGGAACCGGTCTGGCAGAATCCTTATTAACcgct  >  2:607464/1‑274 (MQ=255)                                                                                                                                                                                                          tGAAAGCGGCAGCATcgcagcttttgacggtaaatcggaatgcgggcgcgcctcattaacgacgcgggctgaatcggcataacgcagccagtgggagacggcaggcatatggtccatgcactgacagctggcaatggcggtcatcgcgccacagttggaatgaccacaaatc                                                                                                        <  2:571605‑M2/172‑158 (MQ=255)                                                                                                                                                                                                          tGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTtgt                                                                                                                                                                                                                                    >  2:184817/1‑48 (MQ=255)                                                                                                                                                                                                          tGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCa                                                                                                                                                       >  1:33406/1‑125 (MQ=255)                                                                                                                                                                                                          tGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGa                                                                                                                                                 >  1:199901/1‑131 (MQ=255)                                                                                                                                                                                                          tGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCAttt                                                                                  >  1:368070/1‑194 (MQ=255)                                                                                                                                                                                                          tGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCAGCAAAGCTAAAAAAGATCTCTCATTTGCCGAGATTGCCGACGGCACCGGTCTGGCAGAAGCCTTTGTAACcgcg  >  2:72643/1‑274 (MQ=255)                                                                                                                                                                                                              aGCGGCAGCATcgcagcttttgacggtaaatcggaatgcgggcgcgcctcattaacgacgcgggctgaatcggcataacgcagccagtgggagacggcaggcatatggtccatgcactgacagctggcaatggcggtcatcgcgccacagttggaatgaccacaaatcacaa                                                                                                    >  1:571614‑M2/1‑11 (MQ=255)                                                                                                                                                                                                              aGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCa                                                                                                                                                                                                                                <  1:184819/48‑1 (MQ=255)                                                                                                                                                                                                              aGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAg                                                                                                                                                   <  2:33405/125‑1 (MQ=255)                                                                                                                                                                                                              aGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTc                                                                                                                                             <  2:199899/131‑1 (MQ=255)                                                                                                                                                                                                              aGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCt                                                                              <  2:368066/194‑1 (MQ=255)                                                                                                                                                                                                                 ggCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGGTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACAGCa                                                                                                                >  1:307724/1‑157 (MQ=255)                                                                                                                                                                                                                     tcaTCGCAGTTTTTGACGGCGCAACCCGCCAGTTTCTCCCACTGTCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAatat                                                                                                            <  2:307720/156‑1 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                    TGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAACCTTATTTTTAAACCATCAGGAGTTCCACCATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCAGCAAAGCTAAAAAAGATCTCTCATTTGCCGAGATTGCCGACGGCACCGGTCTGGCAGAAGCCTTTGTAACCGCG  >  CP009273/354860‑355334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.