New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2364700	24 (0.700)	5 (0.150)	5/308	2.1	19.3%	coding (314/1653 nt)	arnT	4‑amino‑4‑deoxy‑L‑arabinose transferase
	?	CP009273	= 2364868	19 (0.580)					coding (482/1653 nt)	arnT	4‑amino‑4‑deoxy‑L‑arabinose transferase
Rejected: Frequency below/above cutoff threshold.

ATTGGGCAATGGCTATTTGGCGCGAATAACTTTGGTGTGCGGGCAGGCGTTATCTTTGCGACCCTGTTAACTGCCGCGCTGGTGACCTGGTTTACTCTGCGCTTATGGCGCGATAAACGTCTGGCTCTACTCGCCACAGTAATTTATCTCTCATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCA  >  CP009273/2364597‑2365117                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                          aTTGGGCAATGGCTATTTGGCGCGAATAACTTTGGTGTGCGGGCAGGCGTTATCTTTGCGACCCTGTTAACTGCCGCGCTGGTGACCTGGTTTACTCTGCGCTTATGGCGCGATAAACGTCTGGCTCTACTCGCCACAGTAATTTATCTCTCATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAaag                                                                                                                                                                                                                                                        <  1:162588‑M2/275‑4 (MQ=255)   tGGGCAATGGCTATTTGGCGCGAATAACTTTGGTGTGCGGGCAGGCGTTATCTTTGCGACCCTGTTAACTGCCGCGCTGGTGACCTGGTTTACTCTGCGCTTATGGCGCGATAAACGTCTGGCTCTACTCGCCACCGTAATTTATCTCTCATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGTCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGGGGAAAGGCACaagc                                                                                                                                                                                                                                                       <  1:96919‑M2/274‑5 (MQ=255)                  ttgggcgAATAACTTTGGTGTGCGGGCAGGCGTTATCTTTGCGACCCTGTTAACTGCCGCGCTGGTGACCTTGTTTACTCTGCGCTTATGGNGCGATAAACGTCTGGCTCTACTCGCCACAGTAATTTATCTCTCATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGCAAAGGCAAAAGCGCAGGATTTTTActgc                                                                                                                                                                                                                                       <  1:491201/271‑1 (MQ=255)                     gtcgaacgcgtttGGGGGGCGGGCGGGCTTTATCTTTGCGACCCTGTTAACTGCCGCGCTTGTGACCTGGTTTACTCTGTGCTTATGGCGCGATAAACGTCTGGCTCTACGCGCCACAGTAATTTATCTCTCATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTActgctg                                                                                                                                                                                                                                     <  2:96918/264‑1 (MQ=255)                                                                            gtataagagccagggTTTTGTCTGCGCTTATGGCGTGATAAACTTTTGGCTCTACTCGCCACAGTAATTTATCTCTCATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTtgccgtgcc                                                                                                                                                                             <  1:58203/262‑1 (MQ=255)                                                                                                                              ttataagtgtcaggTAATTTATCTTTCATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACTTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGAt                                                                                                                            <  1:132511/261‑1 (MQ=255)                                                                                                                                                    ctctcATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTAATGACCAAAGGTTTTCTCGCCCTtgcc                                                                                                                                                                                  >  1:439082/1‑198 (MQ=255)                                                                                                                                                        cATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTtgccgtgc                                                                                                                                                                              <  2:439077/198‑1 (MQ=255)                                                                                                                                                         aTTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGAcc                                                                                                                                                                                                       >  2:484367/1‑172 (MQ=255)                                                                                                                                                             tttATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAAAGACCTGCGGCATGAGGGTGATGACCAAAg                                                                                                                                                                                                   <  1:484374/172‑1 (MQ=255)                                                                                                                                                                       aTGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAaa                                                                                                                                                                                                                                                         <  2:572710‑M2/108‑3 (MQ=255)                                                                                                                                                                           cATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAaagcgc                                                                                                                                                                                                                                                     >  1:572719‑M2/1‑102 (MQ=255)                                                                                                                                                                              cGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAaagcg                                                                                                                                                                                                                                                      <  2:595972‑M2/104‑6 (MQ=255)                                                                                                                                                                                  aCTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAgg                                                                                                                                                                                                                                                  <  1:595981/104‑1 (MQ=255)                                                                                                                                                                                            tGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTNTGTGGGGGTTACACGTTGCGATTTTACGTTTCCCCCtttgctctt                                                              >  2:435694/1‑267 (MQ=255)                                                                                                                                                                                                      gTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAaagcgcagagtaaaccaggtcaccagcgcggcagttaacagggtcgcaaagataacgcctgcccgcacaccaaagttatt                                                                                                                                                                           <  1:390665‑M2/155‑81 (MQ=255)                                                                                                                                                                                                          tttGTATTCTTGCTGGTGGGGGGAATGTGCAGCTTCTTGCTGGCAATGAAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAA‑GTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTGCTCCCTTGGGGACTGGCGATAGCGCAGCg                                               <  1:353384/273‑1 (MQ=255)                                                                                                                                                                                                          aTTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAaagcgcagagtaaaccaggtcaccagcgcggcagttaacagggtcgcaaagataacgcctgcccgcacaccaaagttattcgcg                                                                                                                                                                       >  2:390661‑M2/1‑71 (MQ=255)                                                                                                                                                                                                                          tggCGGGAATGTGCAGCTTCTGGCTGGCAATTCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCACTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAAAGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGAAGGTTCTCCCTTGGGGCCTGGCGATAGCGGAGCGGGAggtcaactttggg                               >  1:276012/1‑263 (MQ=255)                                                                                                                                                                                                                                gatggtgCGGCTGCTGGCTTGCAAGGCAGGCACAGACGGGGAAAGGCAAAAGCGCAGGATTTTTATTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTCCGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTAt                         <  2:276008/271‑1 (MQ=255)                                                                                                                                                                                                                                    gtgCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACgg                                                                              >  2:95198/1‑218 (MQ=255)                                                                                                                                                                                                                                        aGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTtct                                                                          <  1:95199/218‑1 (MQ=255)                                                                                                                                                                                                                                          cTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAaagcg                                                                                                                                                                                                                                                      <  2:375352‑M2/44‑6 (MQ=255)                                                                                                                                                                                                                                              tggctggcAATGCAGGCACAGACGTGGAAAGGCAAaagcgcagagtaaaccaggtcaccag                                                                                                                                                                                                                                 <  1:313882‑M2/61‑27 (MQ=255)                                                                                                                                                                                                                                              tggctggcAATGCAGGCACAGACGTGGAAAGGCAAaagcgcaga                                                                                                                                                                                                                                                  >  1:375356‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                                               ggctggcAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTtgc                                                                                                                                                                                   >  2:134483/1‑106 (MQ=255)                                                                                                                                                                                                                                                  tggcAATGCAGGCACAGACGTGGAAAGTCAAaagcgcagagtaaaccaggtcaccagcgcg                                                                                                                                                                                                                             >  2:313878‑M2/1‑31 (MQ=255)                                                                                                                                                                                                                                                   ggcAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTtgccgtg                                                                                                                                                                               <  1:134484/106‑1 (MQ=255)                                                                                                                                                                                                                                                                       ggAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTAGGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCa  >  2:192450/1‑259 (MQ=255)                                                                                                                                                                                                                                                                       ggAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTAGGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCa  <  1:192452/259‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                          ATTGGGCAATGGCTATTTGGCGCGAATAACTTTGGTGTGCGGGCAGGCGTTATCTTTGCGACCCTGTTAACTGCCGCGCTGGTGACCTGGTTTACTCTGCGCTTATGGCGCGATAAACGTCTGGCTCTACTCGCCACAGTAATTTATCTCTCATTGTTTATTGTCTATGCCATCGGCACTTATGCCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCA  >  CP009273/2364597‑2365117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.