New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3287192 =	36 (1.050)	4 (0.120)	4/308	2.4	13.3%	coding (434/2037 nt)	lpoA	OM lipoprotein stimulator of MrcA transpeptidase
	?	CP009273	3287375 =	18 (0.550)					coding (617/2037 nt)	lpoA	OM lipoprotein stimulator of MrcA transpeptidase
Rejected: Frequency below/above cutoff threshold.

GCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAATCGCCCTGCTGTTGCCACTGAATGGCCAGGCAGCGGTATTTGGTCGCACTATTCAGCAAGGCT  >  CP009273/3287140‑3287596                                                                                                                                                                                                                                            |                                                                                                                                                                                                                              gCCGATTTAGAACAAAGCCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGTAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCACGTCTGGTTTGATAACCGTAACGATcccaa                                                                                                                                                                                        >  1:434995/1‑273 (MQ=255) gCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATAACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGCTCCCGa                                                                                                                                                                                        >  1:428795/1‑275 (MQ=255)                                                                 gTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCt                                                                                                                                                                                                                            >  2:356001/1‑175 (MQ=255)                                                                     ttCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAg                                                                                                                                                                                                                        <  1:356005/175‑1 (MQ=255)                                                                             ctttACTGCCCGCGTTAATTGAGCAGGAACGGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAACGCa                                                                                                             <  2:214888/273‑1 (MQ=255)                                                                                            tAAGTGCTCAGGAACCGCTGCTTAGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTaaaa                                                                                             <  1:417428/275‑1 (MQ=255)                                                                                                                                                tGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAAAGCAGTGGGTTAACGTAAAAGAGTTTAAACCAGCCTCCACCAACAAAAACGCCCAGATCTTGCAACGCAATg                                         >  2:571224/1‑275 (MQ=255)                                                                                                                                                    aCCTTGCAGGCTCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTTGTGATCAACGCCGACGATATTATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCAACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATACGAACAATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTaaa                                                                                    <  2:46063/228‑1 (MQ=255)                                                                                                                                                    aCCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGtt                                                                                                                                                                                                             >  1:570622/1‑107 (MQ=255)                                                                                                                                                    aCCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATACGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAATCGCCACGCTGTTGCCACTGAATgaaca                                     >  1:379169/1‑271 (MQ=255)                                                                                                                                                        ggCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGAt                                                                                                                                                                                                         <  2:570613/107‑1 (MQ=255)                                                                                                                                                              ccctctCCTCCATGACTCAGGAACAGTCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATAGAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAATCGCCCTGCTGTTGCCACAGAATGGCCAGGCAGCGGTa                           <  1:557766/273‑1 (MQ=255)                                                                                                                                                                    ctttcgcgccaagcagcggttcctgagcaattaacgcgcgcagtaaatcaatggaaggacgcccctggctggATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAATCGCCCTGCTGTTGcc                                                 >  1:155434‑M2/73‑247 (MQ=255)                                                                                                                                                                      ttcgcgccaagcagcggttcctgagcaattaacgcgcgcagtaaatcaatggaaggacgcccctggctggATCTGCAGCGCGTCTGGt                                                                                                                                                                                                              >  1:232220‑M2/71‑88 (MQ=255)                                                                                                                                                                        cgcgccaagcagcggttcctgagcaattaacgcgcgcagtaaatcaatggaaggacgcccctggctggATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAATCGCCCTGCTGTTGCCACTg                                             <  2:155433‑M2/179‑1 (MQ=255)                                                                                                                                                                        cATGACTCAGGAACGGGCGAATATGCTGTTGCTCATCGCCGACGAAAATATTCTTCAAGGCTGGCTGGATCTGCAGTGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGNGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAAGCGCCCTGCTGTTGCCACTGAATGGCCAGGCAGCGGTATTTGGTCGCa                 <  1:571233/275‑1 (MQ=255)                                                                                                                                                                          cgccaagcagcggttcctgagcaattaacgcgcgcagtaaatcaatggaaggacgcccctggctggATCTGCAGCGCGTCTGGTTTGa                                                                                                                                                                                                          <  2:232217‑M2/22‑1 (MQ=255)                                                                                                                                                                                       ggCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGGTGGATCTGAAGCGCGTATGGTTTGATAACCGTAACGATCCCGACAAGATGAAAGCCGGGATCGACGAATGGCAGa                                                                                                                                                        >  1:413804/1‑125 (MQ=255)                                                                                                                                                                                       ggCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGCAAGCCGGGATCGCCGACTGGCAGAACCGTTATCCGAACCATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGCTTAAACCAGCCACGCCCAACCAAATCGCCATACAGTTGCCACTGACTGGCCAGGAGCCGGTATTTGTTGCCACTCTTCAgacagtcg  >  2:494264/1‑268 (MQ=255)                                                                                                                                                                                           aaTACGCTGGTGATCAACGCCTAAGAAAATATTCTGCAAGGCTGGCTGTATCTGCATCGCGTCTGGTTTGATAGCCGTAACGATCCCTACATGATGAAAGCCGAGATCGCCGACTGGCAGAAACg                                                                                                                                                    <  2:413800/125‑1 (MQ=255)                                                                                                                                                                                                              ccGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAgcgc                                                                                                                                                                                                                     >  2:248064/1‑41 (MQ=255)                                                                                                                                                                                                                  cgaAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCt                                                                                                                                                                                                                 <  1:248068/41‑1 (MQ=255)                                                                                                                                                                                                                                       gctggATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGaaaa                                                                                                                          >  2:154092‑M2/6‑107 (MQ=255)                                                                                                                                                                                                                                           gATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAAtgct                                                                                                                      <  1:154093‑M2/106‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                              GCCGATTTAGAACAAAACCAGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCTCAGGAACCGCTGCTTGGCGCGAAAGAAAAACAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGAACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATAACCGTAACGATCCCGACATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATGCTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAATCGCCCTGCTGTTGCCACTGAATGGCCAGGCAGCGGTATTTGGTCGCACTATTCAGCAAGGCT  >  CP009273/3287140‑3287596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.