New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	29 (0.830)	30 (0.860)	23/290	NT	52.6%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	25 (0.720)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

GTTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATG  >  CP009273/359839‑360345                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                   gTTTTCCGCCAGTCGCCCCTGCTGCCCGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                                                                                                                                                                            <  1:329951/274‑1 (MQ=255)     tCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCCCC‑GATGATAAGCTGGCAAACAAGAGAAATCCGATCCCCAAATACTggacg                                                                                                                                                                                                                                         >  2:4198/1‑270 (MQ=255)                            ctaccacgtgcagggctcccgattataaggtgtgaaacctgtgaattcctatccccattccctggcagtttatggcgggcgtcctgcccgccaccctacgggccgttgcttcgcaacgttcatatccgttcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc                                                                                                                                                                                                                 >  1:631798‑M1/240‑275 (MQ=255)                              cgcTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGAGTCCTGACCGCAAc                                                                                                                                                                                                               >  1:66446/1‑274 (MQ=255)                                        cccGGCTTCTGACCAGGCGGTCGTGTTCCGATGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCTCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGNAGCTCC‑GATGATAAGCTGTCAACCATGAGAATTCCGATCCCCAATTACTGGCAGTTTATGGAGGACGACCGTCCCTCCCCCCTccctgcc                                                                                                                                                                                                     >  1:520119/1‑269 (MQ=255)                                         gagctccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgatcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCCCCGGGcc                                                                                                                                                                                                     <  1:264042‑M1/48‑1 (MQ=255)                                                   gccaagctgccaaacctgacaatgcctctccccatttccttgcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa                                                                                                                                                                                          >  2:264038‑M1/217‑275 (MQ=255)                                                                              cgcgTACTGTGGGCCAGAGTTGCCCGTCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTTTTTACCTTGTGGAGCGACATCCAGNGGCACTTCACCGCTTGCCCGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCTGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                                                                                                                              <  1:538794/275‑1 (MQ=255)                                                                               gagTATTGTGAGTAAGAGTTGCCAGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGATCGACATCCAGAGGCACTTCACCTCTTGACAGCGGCTTACCATCCAGCGCCACCAGCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                                                                                                                              <  2:520113/272‑1 (MQ=255)                                                                                   aCTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCCgg                                                                                                                                                                                                        >  1:135661/1‑228 (MQ=255)                                                                                               agTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt                                                                                                                                                                                                                                                 >  2:520060/1‑175 (MQ=255)                                                                                                   gCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg                                                                                                                                                                                                                                             <  1:520066/175‑1 (MQ=255)                                                                                                    cccGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATC‑ACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggc                                                                                                                                                                                                                                 >  2:37340/1‑185 (MQ=255)                                                                                                        gcgcTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATC‑ACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc                                                                                                                                                                                                                             <  1:37340/185‑1 (MQ=255)                                                                                                                            ttCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGTAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                            <  2:51886/231‑1 (MQ=255)                                                                                                                            ttCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGTAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                            >  1:51887/1‑231 (MQ=255)                                                                                                                                       cacgcaacganttACCTTGTGGGGCGACCGACAGAGGCACTTCTCCGCGTGCCAGCTGCTTACCCGCCCGCGCCACCACCCAATGCAGGCGCTCC‑GATGAGAAGCTGTCAAACATGAGAATTCCGATCCCCAAGGCCTGGCAGTTTATGGCGGGCTTCCTCCCCCCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCATGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑Ct                                                                                                     <  2:66445/263‑1 (MQ=18)                                                                                                                                            aaatttttACCTTGTGGCGCGACCTCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGAc                                                                                               <  2:606531/270‑1 (MQ=255)                                                                                                                                               tGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTNCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGACTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACAACACATAAAACGAAAGGCCCAGA‑CTTTCGAc                                                                                               >  1:606538/1‑272 (MQ=255)                                                                                                                                                   tACCTTGTGGAGCTACATCCAGGAGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCTCCACCATCCAGTGCAGGGGCTCC‑GATGATAAGCTGTCAAACATGAGCATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                            <  1:193430/208‑1 (MQ=255)                                                                                                                                                         gtgGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGa                                                                                                                                                                  >  2:39928/1‑196 (MQ=255)                                                                                                                                                          cgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaatt                                                                                                                                                                                                                                                 <  1:202035‑M1/4‑1 (MQ=255)                                                                                                                                                            gAGCGACATCCAGAGGCACTTAACCGCTTGCCAGCGGCTTACCATCCAGCCCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATCCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                            <  1:212092/199‑1 (MQ=255)                                                                                                                                                             aGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                                                                                                                              <  1:39928/196‑1 (MQ=255)                                                                                                                                                              cccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTg                                                                                                                                                                                                                                             >  2:202032‑M1/110‑117 (MQ=255)                                                                                                                                                                        gagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCa                                                                                                                                                                                                                                                    <  2:579274/99‑1 (MQ=255)                                                                                                                                                                         atgCACTTCACCGCTGGCCAGCGGCTTACCATCCCGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg                                                                   <  1:4198/272‑1 (MQ=255)                                                                                                                                                                           tcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggacttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCCGGAGCGCGTTCACCGACAAACAACAGATAACACGAAAGGCACAGT‑CTTTCGACTGAGCCtttcgttatatttattgcattgg                                                                  <  1:18103‑M1/178‑11 (MQ=255)                                                                                                                                                                                  caggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcg                                                                                                                                                                                                                                <  1:345773‑M1/21‑1 (MQ=255)                                                                                                                                                                                    ggagagcgttcaccgacaaacaacagataacacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc                                                                                                                                                                                                                 >  2:516879‑M1/88‑123 (MQ=255)                                                                                                                                                                                      agagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg                                                                                                                                                                                                                            >  2:345768‑M1/86‑110 (MQ=255)                                                                                                                                                                                         gcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaatt                                                                                                                                                                                                                                                 >  1:424493‑M1/83‑86 (MQ=255)                                                                                                                                                                                          cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCATTTCGCTTTATTTGATGCCAGGGGAATTGGGaattaatt                                                  <  1:314908‑M1/194‑1 (MQ=255)                                                                                                                                                                                             tcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt                                                                                                                                                                <  1:467402‑M1/85‑1 (MQ=255)                                                                                                                                                                                                 cgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                            >  2:467396‑M1/75‑163 (MQ=255)                                                                                                                                                                                                        caacagataaaactaaatgtccagtctttcgactgtgcctttcgttttatttgattcctggggaattCATCCCTGGCAGTTTATGGCGTGCGTCCTGCCCGCCTCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCAGCGGATTTGTCCTCCTCAGGAGAGCGTTAACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTATTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAg                                    >  1:192170‑M1/68‑275 (MQ=255)                                                                                                                                                                                                             cgcCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGa                                                                                                                                                                  >  2:323863/1‑144 (MQ=255)                                                                                                                                                                                                              ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGNTCAAACGAAAGGCCAAGT‑ATTTCGACTTAGCCTTTCGTTTTATTTGATGCACGGGGAATTGGGAATTAATTCTTAAAGAAAAAAGggcccc                              <  1:575255‑M1/214‑3 (MQ=255)                                                                                                                                                                                                              ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGa                                                                                                <  2:47686‑M1/148‑1 (MQ=255)                                                                                                                                                                                                                 accaTCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                                                                                                                              <  1:323868/144‑1 (MQ=255)                                                                                                                                                                                                                  ctaccacgtgcagg‑gCTCCCGATTATAAGGTGTGAAACCTGTGAATTCCTATCCCCATTCCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTACGGGCCGTTGCTTCGCAACGTTCATATCCGTTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgcc                         >  1:631798‑M2/8‑239 (MQ=255)                                                                                                                                                                                                                  aacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGa                                                                                            >  1:47687‑M1/58‑209 (MQ=255)                                                                                                                                                                                                                   acgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcggg                                                                                                                                                                                                                              <  2:258865‑M1/23‑1 (MQ=255)                                                                                                                                                                                                                   acgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaa                                                                                                                      <  1:21326‑M1/127‑1 (MQ=255)                                                                                                                                                                                                                       aaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTc                                                                                                                                                                                                                          >  1:258869‑M1/53‑79 (MQ=255)                                                                                                                                                                                                                          tGCAGGAGCTCC‑GATGATAAGCTGTCAATCATGAGAATTCCGATACCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCCGGCCGTTGCTTCGCAACGTTCACATCCGCTCCCTGCGGATTTGCCCTACTCAGGCGAGCGTTCACCGACACAGAACAAATAAAACGAAAg                                                                                                               >  1:541931/1‑182 (MQ=18)                                                                                                                                                                                                                          tGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCTTCGCAACGTTAAAAGCCGCTACCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGa                                                                                                                          >  1:105847/1‑171 (MQ=255)                                                                                                                                                                                                                               gAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGATCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccccccgggcc             <  1:264042‑M2/274‑49 (MQ=255)                                                                                                                                                                                                                                     cgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTAt                                                                                                                                                                                                                                    <  1:33301‑M1/17‑1 (MQ=255)                                                                                                                                                                                                                                     cgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCGCCAc                                                                                                                                                                                                               <  2:511411‑M1/38‑1 (MQ=255)                                                                                                                                                                                                                                     cgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTc                                                                                                  <  1:108056‑M1/146‑1 (MQ=255)                                                                                                                                                                                                                                       actgagcctttcgttttatttgctgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa     >  1:726‑M1/37‑275 (MQ=255)                                                                                                                                                                                                                                        ctgtgcctttcgttttatttgatgcctggggaattAATTCCTGGTAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACATTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa     >  1:395095‑M1/36‑274 (MQ=255)                                                                                                                                                                                                                                         tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcg                                                                                                                                                                                                                                >  2:33301‑M1/35‑55 (MQ=255)                                                                                                                                                                                                                                         tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACt                                                                                              >  2:108055‑M1/35‑184 (MQ=255)                                                                                                                                                                                                                                         tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTCTATGACGGGCGTACTGCCCGCCACCCTc                                                                                                                                                                                                           >  1:511417‑M1/35‑76 (MQ=255)                                                                                                                                                                                                                                          gccaagctGCCAAACCTGACAATGCCTCTCCCCATTTCCTTGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgca  >  2:264038‑M2/4‑216 (MQ=255)                                                                                                                                                                                                                                                cTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTc                                                                                                                                                      >  2:239072/1‑122 (MQ=255)                                                                                                                                                                                                                                                  cgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCAGCGGATTTGTCCTCCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACgaaaa                                                                                                               <  1:422540‑M1/134‑2 (MQ=255)                                                                                                                                                                                                                                                   tCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg                                                                                                               >  2:47245/1‑158 (MQ=255)                                                                                                                                                                                                                                                    cAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGga                                                                                                                                                  <  1:239075/122‑1 (MQ=255)                                                                                                                                                                                                                                                     tttatttgatgcctggggcattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGaca                                                                                                                                   >  1:467765‑M1/23‑136 (MQ=255)                                                                                                                                                                                                                                                       aCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc                                                                                                           <  1:47246/158‑1 (MQ=255)                                                                                                                                                                                                                                                          tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATTGAGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCTTCGCAACGTTCAAATCCGCCCCCGGCGGATTTGTCCTTCTCAGGAGAGCGTTCCCCGacca                                                                                                                                  >  1:405878/1‑130 (MQ=17)                                                                                                                                                                                                                                                                   ggggaattAATTCCTGGCAGTTTATGGCGGGCGTTCTGCCCGACACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTCCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGCACTTTC‑ACTGAGCCTTTCGTTTTATTTGATGCCTggg                                                                  <  2:49181‑M1/178‑1 (MQ=255)                                                                                                                                                                                                                                                                   ggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGtttt                                                                                <  2:345607‑M1/164‑1 (MQ=255)                                                                                                                                                                                                                                                                       aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTTTTAttt                                                                            >  1:345612‑M1/5‑172 (MQ=255)                                                                                                                                                                                                                                                                        cccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                            >  2:405653/1‑92 (MQ=38)                                                                                                                                                                                                                                                                        attAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                            >  1:405659‑M1/4‑92 (MQ=255)                                                                                                                                                                                                                                                                         ttAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCGCCACCCCCCGCGCCGTTGCCTCGCAACCTTCAAATCCGCCCCCGGCGGTTTTGTCCTACt                                                                                                                                                       <  2:450549‑M1/94‑1 (MQ=255)                                                                                                                                                                                                                                                                         ttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCtt                                                                                                                                                                                              <  1:347794‑M1/55‑1 (MQ=255)                                                                                                                                                                                                                                                                         ttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCg                                                                                                                                                                             <  2:2635‑M1/72‑1 (MQ=255)                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                   GTTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCC‑GATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT‑CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATG  >  CP009273/359839‑360345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.