| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP009273 | 2,400,028 | Δ9 bp | coding (85‑93/939 nt) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2400027 | 2 (0.020) | 124 (1.390) | 69/218 | 0.0 | 98.5% | coding (94/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | 2400037 = | 2 (0.020) | coding (84/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
Only 100 of 131 total aligned reads displayed.
GTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAA > CP009273/2399901‑2400175 | aaccaagaagttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcaa < 1:1699557‑M2/2‑1 (MQ=255) accaagaagttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcaaaa > 1:2017721‑M2/136‑139 (MQ=255) accaagaagttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcaaaa > 1:1517573‑M2/136‑139 (MQ=255) aagttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGGGTTc > 1:4279983‑M2/130‑139 (MQ=255) gaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGGGGTCAGATc > 1:4797349‑M2/125‑139 (MQ=255) tgccatgttcagttaacagtttgttgcgaccgtgccgagcgacccgctctttcccaacgagttgttccagacgctgcatttgctgacttacggcggcctgagtaccacacacagcggcagcATAAGTGTTCAGATCGgc < 1:4842711‑M2/18‑1 (MQ=255) gccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgca < 1:4940939‑M2/19‑1 (MQ=255) ccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcCAAAGAGTTCAGAGCggcc > 1:3457765‑M2/120‑137 (MQ=255) atgttctgttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaaca > 1:4322658‑M2/118‑139 (MQ=255) gttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcaattgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaacagc < 1:2787604‑M2/24‑1 (MQ=255) tcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaacagca > 1:204757‑M2/114‑138 (MQ=255) tcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaacagca < 1:2959833‑M2/25‑1 (MQ=255) agttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaacagcaaca > 1:377244‑M2/112‑139 (MQ=255) agttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaac < 1:3795611‑M2/21‑1 (MQ=255) ttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACaaa > 1:742462‑M2/110‑139 (MQ=255) ttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGGGTTCAGATCGGCAACAGCaaaaaa > 1:4193741‑M2/110‑139 (MQ=255) taacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGcaacaa < 1:715067‑M2/29‑1 (MQ=255) agtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcaaaa > 1:3422275‑M2/105‑108 (MQ=255) agtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGt > 1:2170813‑M2/105‑137 (MQ=255) agtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGt > 1:4604269‑M2/105‑137 (MQ=255) ttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGtt < 1:3412410‑M2/34‑1 (MQ=255) ttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTca > 1:3638462‑M2/102‑139 (MQ=255) tgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTcag < 1:2334600‑M2/39‑1 (MQ=255) gttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTcagc > 1:2214335‑M2/100‑139 (MQ=255) gaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtc < 1:207659‑M2/45‑1 (MQ=255) gaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtc > 1:1335850‑M2/95‑139 (MQ=255) gtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaaca > 1:2719324‑M2/91‑112 (MQ=255) tgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgagg > 1:758139‑M2/90‑138 (MQ=255) gacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt < 1:3883030‑M2/50‑1 (MQ=255) gacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt < 1:2217963‑M2/50‑1 (MQ=255) cgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcg < 1:1613080‑M2/52‑1 (MQ=255) cgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcg < 1:4793731‑M2/52‑1 (MQ=255) gaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGtt < 1:1652788‑M2/57‑1 (MQ=255) tctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtt < 1:199955‑M2/61‑1 (MQ=255) tctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTAt < 1:5122502‑M2/63‑1 (MQ=255) ctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCgg < 1:4091935‑M2/66‑1 (MQ=255) tcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAAGAGCAACAAATGTTCTCAGCAGAtcga > 1:4562933‑M2/71‑117 (MQ=255) tgttCCAGACGCTGCATTTGCTGACTTTCGGCAGGATGAGTACGACCCCCA‑‑‑‑‑‑‑‑‑GCGGCAGCAAAAGTGTTCAGGTCGGCAAAAGCAACAAATGTTCTCAACAGATCGAGGTCGAAGTTAATTATCGGACGAATTGCAc < 1:4750294/136‑1 (MQ=255) acgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGAttt > 1:2330466‑M2/66‑138 (MQ=255) acgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGAttt > 1:313054‑M2/66‑138 (MQ=255) cgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGc < 1:3340195‑M2/75‑1 (MQ=255) gagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATTTTCTCATCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:2808598‑M2/76‑1 (MQ=255) gagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:4889017‑M2/76‑1 (MQ=255) gagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:3902821‑M2/76‑1 (MQ=255) gagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:2735927‑M2/76‑1 (MQ=255) gagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:4738328‑M2/76‑1 (MQ=255) gttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc < 1:1374043‑M2/77‑1 (MQ=255) gttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc < 1:517145‑M2/77‑1 (MQ=255) gttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAGTATCGGACGATTTGCAc < 1:4661108‑M2/77‑1 (MQ=255) gttccagacgctgcatttgctgacttacggcggactgagtacgacacacatcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGATGTTAATTATCGGACGATTTGCACTTAt < 1:1284163‑M2/81‑1 (MQ=255) gttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTAt < 1:2024506‑M2/81‑1 (MQ=255) tccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa < 1:283591‑M2/83‑1 (MQ=255) tccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa < 1:4747219‑M2/83‑1 (MQ=255) ccagacgctgcagttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCCACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGCCGAGTTGCACTTATCa < 1:3974003‑M2/83‑1 (MQ=255) cagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCata < 1:1849521‑M2/85‑1 (MQ=255) cgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATATGCACTTATCatata < 1:2554583‑M2/87‑1 (MQ=255) gctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATAtatta < 1:2812964‑M2/90‑1 (MQ=255) tgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACaaa > 1:1982219‑M2/48‑77 (MQ=255) tgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt < 1:3687998‑M2/50‑1 (MQ=255) tgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATAtattat < 1:3917079‑M2/91‑1 (MQ=255) tgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATc > 1:444987‑M2/48‑139 (MQ=255) ctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg > 1:234142‑M2/40‑139 (MQ=255) tgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg < 1:4593132‑M2/100‑1 (MQ=255) gacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAt > 1:1106440‑M2/38‑97 (MQ=255) acttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggt < 1:3347237‑M2/50‑1 (MQ=255) acttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:245842‑M2/76‑1 (MQ=255) cttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggcgg < 1:1118964‑M2/104‑1 (MQ=255) ttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggcggc < 1:493027‑M2/105‑1 (MQ=255) ttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggcggc < 1:1476539‑M2/105‑1 (MQ=255) acggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTc > 1:1794782‑M2/33‑139 (MQ=255) cggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACt < 1:5131983‑M2/95‑1 (MQ=255) cggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg < 1:2033176‑M2/100‑1 (MQ=255) gcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCAt > 1:3075443‑M2/30‑138 (MQ=255) cggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATa < 1:4597494‑M2/110‑1 (MQ=255) gactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGCGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTg > 1:5082024‑M2/27‑139 (MQ=255) gactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGAttt > 1:2734332‑M2/27‑99 (MQ=255) gactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTg > 1:4907310‑M2/27‑139 (MQ=255) actgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGAt < 1:3136596‑M2/71‑1 (MQ=255) ctgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACATCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACTATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTgat < 1:3447593‑M2/115‑2 (MQ=255) ctgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAg < 1:1056817‑M2/115‑1 (MQ=255) agtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATAtatta < 1:3440625‑M2/90‑1 (MQ=255) agtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggcggc > 1:2553226‑M2/22‑126 (MQ=255) agtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCCCATa > 1:4612921‑M2/22‑131 (MQ=255) tacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGt > 1:4110289‑M2/20‑139 (MQ=255) cgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg < 1:3334909‑M2/100‑1 (MQ=255) cgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTa < 1:1309446‑M2/122‑1 (MQ=255) gacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTaa > 1:823208‑M2/17‑139 (MQ=255) acacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTAt > 1:554244‑M2/16‑96 (MQ=255) cacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc < 1:2963259‑M2/77‑1 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGgcaacagcaac > 1:3086130‑M2/12‑38 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCatatat > 1:1000121‑M2/12‑99 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCatat > 1:3455359‑M2/12‑97 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg > 1:858686‑M2/12‑111 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAAt > 1:3667273‑M2/12‑135 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAAt > 1:845440‑M2/12‑135 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAAt > 1:4648087‑M2/12‑135 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATg > 1:141450‑M2/12‑136 (MQ=255) cggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATa > 1:752844‑M2/8‑117 (MQ=255) cagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCatata > 1:380676‑M2/5‑91 (MQ=255) cagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGcacac > 1:2815199‑M2/5‑139 (MQ=255) | GTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAA > CP009273/2399901‑2400175 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |