| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,977,800 | 0 | A | C | 28.6% | 154.4 / 12.0 | 84 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (51/9); new base C (0/24); total (51/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.01e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATCGCGCCACCATTGAC > CP009273/2977665‑2977937 | aaTGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCacac > 1:3394864/1‑137 (MQ=255) aTGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCt < 1:1861939/139‑1 (MQ=255) ggAAAAATGAGGGAGCCAAGAAAATGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTg > 1:4219465/1‑138 (MQ=255) gAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTgg > 1:1163875/1‑138 (MQ=255) ggAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGAt > 1:1158417/1‑139 (MQ=255) ccccAGAAAATGTATGTCTCTTTGCCAGCATTCATTATTCAACAGATAAAAGACGGCAGATATTTTCCGGTAAGGAGGAAATGCAGAGTTATTCGTCACGTTCAAGGATCAATGCCACCCCCGGGCCCCCGCCGATAc < 1:2571076/137‑1 (MQ=255) cccAGAAAATGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACaa > 1:300733/1‑139 (MQ=255) caaaaaaaTGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAAGGGTCAATGCCACCCCCTGGCCCCCGCCGATACa < 1:946549/133‑1 (MQ=255) aaaaaaTGTATGTCGATTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAAGCCCACCCCCTGGCCCCCGCCGATACAAAGc < 1:1418650/137‑1 (MQ=255) aaaTGTATGTCGACTGCCCAGCAATCATTATTCAACAGATTAAGGACGGCAAATATTTATCGGTAAGGAGGAAATGCAGAGTTCTTCGTCACGTTCAATGGACAACGCCACACCCTGCCCCCCGCCGATACAAAGc < 1:1470419/136‑1 (MQ=255) tggtatgtCGCCTTGCCACCCATCATTATTCAACAGATTAAGGACGGAAGATTTTTACCGGTAAGGAGGAAAGGCAGAGCTATTCGCCATTTTAAATGGTCAATGCCACCCCCTGGCCCCCGCCGATACAAAGCGTTGc < 1:4275781/137‑1 (MQ=255) atttCGTCTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTACCGGTAAGGAGAAAATGCAGAGCTTTTCGTCCCGTTAAAGGGTCAATGCCACCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGt < 1:1638856/136‑1 (MQ=255) atgtCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGc > 1:940888/1‑113 (MQ=255) tgtCGACTTGCTAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGACACAAAGCGTTGCCAGt > 1:3525531/1‑138 (MQ=255) tgtCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGt > 1:4844661/1‑138 (MQ=255) tCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCt > 1:5033945/1‑139 (MQ=255) aCTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCttt > 1:158153/1‑138 (MQ=255) cTTGCCCCCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTTTTCGCCACTTTCAAGGTTAAATGCCACCCCCTGGCCCCCGCCGATACAAAGCGTTg < 1:1858562/127‑1 (MQ=255) cTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGc > 1:4134303/1‑139 (MQ=255) cTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGc > 1:3685916/1‑139 (MQ=255) cTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAAGGGTCAATGCCACCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTg < 1:1553536/138‑1 (MQ=255) ttGCCAGCCATCATTATTCACCAGATTAATGACGGCAGATATTTATCGGTAAGGAGAAAATCCAGAGTTATTCTTCACGTTCAAGGCTCACTCCCCCCCCCGGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCg < 1:1826307/139‑1 (MQ=255) tggcaagccaACATTAATCAAAAGATAAATGAGGGAAGATATTAACCGGAAAGGAGGAAAGGAAGAGTTATTCGTCAAGTGAAGGGGACAACGCCACACCCGGGCCACCGCCGATACAAAGCGTTGCCAGTCCTTTGCg < 1:4613712/134‑1 (MQ=255) gccggttattCACCAAATAAATGACGGAATATATTTATCAGTAGGAAGAAAGCGCAGACCTTTTCGCCAGTTTAATTGGTAAATGCCCCACCCTGCCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTa < 1:3315530/133‑1 (MQ=255) cttcatTATTCAACAAATTAAGGCCGGCAGATATTTATCGTTAAGGAGAAAATGAAGAGTTTTTCGCCACGTTCAGTGGTAAGTCCCCCACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCAt < 1:2680193/134‑1 (MQ=255) catcatTATTCAACAGATTAATGACGGCAGATATTTATCGGAAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCAt < 1:535031/136‑1 (MQ=255) atcatTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACCCCCGGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACg < 1:993041/139‑1 (MQ=255) atcatTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCttt > 1:4438733/1‑127 (MQ=255) tcatTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGt > 1:1492225/1‑139 (MQ=255) attattCAACAGATTAATGCCGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTAAATGGTCAATGCCACCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGttt < 1:1568072/139‑1 (MQ=255) ttCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCCCCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCAcc < 1:837891/139‑1 (MQ=255) tCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGAAAATGCAGAGCTTTTCGTCACTTTAATTGGTCAATGCCCCCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCa < 1:812880/139‑1 (MQ=255) aCAGTTTAATGCCGCAAAATTTTTATCGTGAAGGAGAAAAGGCAGACTTTTTCGTCAGTTTAAAGGGCCAATCCCACCCCCTGCCCCCCGCCGATAC‑AAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTc < 1:3602299/139‑1 (MQ=255) cAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTc > 1:2109681/1‑139 (MQ=255) cAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTc > 1:4420450/1‑139 (MQ=255) cAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTc > 1:1705275/1‑139 (MQ=255) cAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTc > 1:3950171/1‑139 (MQ=255) ataTTAATGACGGCAGATATTTAGCGGTAGGGAGAAAATGCAGAGTTTTTCGTCGCGTTCAATGGTCAATGCCACCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCa < 1:1840249/137‑1 (MQ=255) aTTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTg > 1:142951/1‑113 (MQ=255) aTTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCa > 1:733439/1‑132 (MQ=255) aTTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATg > 1:3843588/1‑139 (MQ=255) aTTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATg > 1:4796743/1‑139 (MQ=255) aTTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGGTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTGGCCAGTCCTTTg > 1:93139/1‑113 (MQ=255) taaaTGCCGGCAGATATTTACCGGTAAGGAGAAAATGCAGAGCTTTTCTTCACGTTAAAGGGTCAATGCCACCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATg < 1:2455034/136‑1 (MQ=255) tAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGa > 1:376511/1‑138 (MQ=255) tAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATAC‑AAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGaa > 1:1020580/1‑138 (MQ=255) aCGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCaga > 1:4273096/1‑139 (MQ=255) ggCGGATATTTAGGGGTAAGGAGAAAAGGCAGAACTATTCGCCACGTTCAATGGTCAATGCCACACCCGGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTTCGTTTCACCATTTCATGAACCAgaga < 1:415777/139‑1 (MQ=255) ggCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAgaga > 1:4414734/1‑139 (MQ=255) gCAGATATTTATCGGTAAGGAGGAAATGCAGATCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGaa > 1:2371819/1‑139 (MQ=255) gCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACg > 1:1024026/1‑114 (MQ=255) gCAGATATTTATCGGTAAGGAGGAAATGCAGAGATATTCGTCACGTTAAATGGTCAATGCCACACCCTGGCCCCCGCCGATCCAAGACGGTGCCAGTCTTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGaa > 1:1904423/1‑139 (MQ=255) tATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGAt > 1:3383861/1‑138 (MQ=255) ggTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGc > 1:2429416/1‑139 (MQ=255) gTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCa > 1:2539953/1‑139 (MQ=255) tAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCagag > 1:379376/1‑122 (MQ=255) tAAGGAGAAAATGCAGACCTTTTCGTCCCTTTCAAGGGCCAACCCCCCCCCCTGGCCCCCGCCGATACAAAGCGTTGc < 1:4254546/78‑1 (MQ=255) aggaggAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAAcc > 1:273327/1‑139 (MQ=255) aggaggAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAACGTTGCAAGTCCTTTGCGGGAATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATGCGGCAccc > 1:175092/1‑139 (MQ=255) ggaAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGaa > 1:5029812/1‑139 (MQ=255) aaaggaagacCTATTCTTCACGTCCAAGGGCCAATCCACCCCCCTGCCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAg < 1:1369033/132‑1 (MQ=255) aTGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTg > 1:1674054/1‑78 (MQ=255) aTGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAgcg > 1:2555578/1‑138 (MQ=255) aTGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAgcg > 1:429172/1‑138 (MQ=255) gagCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATc > 1:2466771/1‑139 (MQ=255) gagCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATc > 1:2211572/1‑139 (MQ=255) agCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGCCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGGTTCACCATTTCATGAACCAGAGAAACCCGGATTCGGCaa > 1:3954150/1‑123 (MQ=255) ttCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCAtt > 1:4956223/1‑88 (MQ=255) ttCGTCACGTTAAATGGTCAGTGCCCCCCCCGGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGa < 1:2294836/139‑1 (MQ=255) cACGTTAAATGGTCAATGCCCCCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAg < 1:1262255/139‑1 (MQ=255) cGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGt > 1:1467422/1‑54 (MQ=255) tCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGaa > 1:2249544/1‑85 (MQ=255) aagtGGTCACGGCCACCCCCGGGCCGCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGAt < 1:2807669/136‑1 (MQ=255) aaaTGGTCAATCCCACCCCCTGCCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGAt < 1:1624826/138‑1 (MQ=255) aTGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACg > 1:3982520/1‑65 (MQ=255) ggTCAATGCCCCCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATcgcg < 1:2450892/139‑1 (MQ=255) ggTCAATCCCCCCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATcgcg < 1:2265370/139‑1 (MQ=255) tCAATGCCACCCCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGa < 1:825961/106‑1 (MQ=255) cAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCAtt > 1:4832263/1‑70 (MQ=255) aaTGCCACACCCTGTCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATCGCGcca > 1:4428834/1‑138 (MQ=255) aaTGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATCGCGcca > 1:3963816/1‑138 (MQ=255) tGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATCGCGccacca > 1:1671636/1‑139 (MQ=255) tGCCACACCCTGCCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCa < 1:442255/70‑1 (MQ=255) gCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGa > 1:4056288/1‑88 (MQ=255) gCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATCGCGCCACcat < 1:2062167/139‑1 (MQ=255) cacCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCATCCGGAAGCGCCTATCGGGTGACCGAGTGCGATCGCTCCACcattgac > 1:4123558/1‑139 (MQ=255) cacCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATCGCGCCACcattgac > 1:900864/1‑139 (MQ=255) cacCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGCGACCGAGTGCGATCGCGCCACcattgac > 1:3607758/1‑139 (MQ=255) acCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATc > 1:3407928/1‑106 (MQ=255) | AATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCATTATTCAACAGATTAATGACGGCAGATATTTATCGGTAAGGAGGAAATGCAGAGCTATTCGTCACGTTCAATGGTCAATGCCACACCCTGGCCCCCGCCGATACAAAGCGTTGCCAGTCCTTTGCGGGCATTACGTTTCACCATTTCATGAACCAGAGAAACCAGGATTCGGCAACCGGAAGCGCCTATCGGGTGACCGAGTGCGATCGCGCCACCATTGAC > CP009273/2977665‑2977937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |