Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,594,1610CT27.2% 213.0 / 49.2 126S62F (TCT→TTT) bglJbgl operon transcriptional activator
Reads supporting (aligned to +/- strand):  ref base C (25/66);  new base T (34/0);  total (60/66)
Fisher's exact test for biased strand distribution p-value = 6.42e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 137 total aligned reads displayed.

GCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAT  >  CP009273/4594026‑4594298
                                                                                                                                       |                                                                                                                                           
gCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGCCTAttttttttt                                                                                                                                          >  1:4005619/1‑139 (MQ=255)
    cATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGAGCTCGTTTGCGGCGGTCATTttttctttttc‑t                                                                                                                                     <  1:3167324/139‑1 (MQ=255)
           agtaTCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCAt                                                                                                                                <  1:557507/137‑1 (MQ=255)
           agtaTCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATga                                                                                                                              <  1:4726746/139‑1 (MQ=255)
                cGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGt                                                                                                                         <  1:3960693/139‑1 (MQ=255)
                  gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTC‑TTCCATGAGAAGGGa                                                                                                                       >  1:1379586/1‑139 (MQ=255)
                    aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTttttctttttc‑t                                                                                                                                     <  1:1545808/123‑1 (MQ=255)
                    aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TGACCTCAGAAAAGAgc                                                                                                                     >  1:846226/1‑139 (MQ=255)
                    aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAg                                                                                                                      <  1:395251/138‑1 (MQ=255)
                    aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGGGAgc                                                                                                                     >  1:113564/1‑139 (MQ=255)
                     ttGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAgcg                                                                                                                    <  1:2448138/139‑1 (MQ=255)
                       gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCa                                                                                                                  <  1:732481/139‑1 (MQ=255)
                       gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCa                                                                                                                  <  1:2120419/139‑1 (MQ=255)
                        agagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TTCCATTAGAAGTGTGCGCag                                                                                                                 >  1:1951508/1‑139 (MQ=255)
                         gagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTCTTTTTC‑TGCCCTGAGAAGTGAGCGCagg                                                                                                                >  1:1638131/1‑138 (MQ=255)
                           gTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGTTCTTTTTGTAATTTTA‑TTCAATAAGAGATGAGGGCagagg                                                                                                              >  1:1525939/1‑138 (MQ=255)
                           gTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCaga                                                                                                                <  1:3004059/137‑1 (MQ=255)
                             ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGCCCTTTTTTCTTTTTT‑TGCCCTGCGAAGGGAGCGCAGGGAgg                                                                                                            >  1:1965529/1‑139 (MQ=255)
                              tATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATATCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCATAGAggg                                                                                                           <  1:4531485/139‑1 (MQ=255)
                               aTTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTC‑TTCCATGAGAAGGGAGCGCagggagggg                                                                                                          >  1:1465216/1‑138 (MQ=255)
                                ttCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttcttttt                                                                                                                                        <  1:2558988/109‑1 (MQ=255)
                                     aaaGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGGGCAGGGAGGGGTTATC‑t                                                                                                   >  1:502180/1‑139 (MQ=255)
                                          ttGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCct                                                                                              <  1:2947109/139‑1 (MQ=255)
                                           tGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTTCctg                                                                                             >  1:1211933/1‑139 (MQ=255)
                                               ggTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCctgactg                                                                                         >  1:1646625/1‑139 (MQ=255)
                                                     ccTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGc                                                                                                                                   <  1:5036465/92‑1 (MQ=255)
                                                     ccTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGc                                                                                                                                   <  1:4216594/92‑1 (MQ=255)
                                                     ccTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAAc                                                                                      <  1:3071518/136‑1 (MQ=255)
                                                       ttATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCagag                                                                                                               <  1:4024861/110‑1 (MQ=255)
                                                        tataAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGa                                                                                <  1:1799736/139‑1 (MQ=255)
                                                          taAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGAtt                                                                              <  1:3084588/139‑1 (MQ=255)
                                                               tCCATACCTATACCAGTCAGGAGTCATTTCAGGCTGCCATGTCGCGGATCTCGTTTGCGGCGGGTATTTTTTTTTTTTT‑TTGCTTGAGAGAGGAGGGCCGGGAGGGGTAGTT‑TTGCCTGACTGTACCGGCGAttgtggt                                                                         >  1:4543754/1‑134 (MQ=255)
                                                               tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTC‑TTCCATGAGAAGt                                                                                                                         >  1:2457557/1‑92 (MQ=255)
                                                               tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TTCCATGAGAAGGGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGtt                                                                         >  1:1777292/1‑139 (MQ=255)
                                                                 cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCACGAGAAGGGAGGGGAGGGGGGGGGTATT‑TTTGCTGTCTGGACTTGCGAGTAAGttt                                                                        >  1:4832684/1‑138 (MQ=255)
                                                                 cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TTGCATTAGAAGTGAGCGCAGGGGGGGGTTATT‑TTTTCTGACTGAACTGGCGAGTAAGttt                                                                        >  1:3824998/1‑138 (MQ=255)
                                                                 cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TTCCATGAGAAGTGAGCGCAGAGGGGGGTTTTC‑TTGCCTGACTGAACTGGCGATTAAGttt                                                                        >  1:254004/1‑138 (MQ=255)
                                                                 cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTc                                                                       <  1:1701085/139‑1 (MQ=255)
                                                                 cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGACAATTTTTTTTTTTT‑TTCCATGAGAAGGGAGCGGAGAGAGGGGTTATC‑TTTTCTTGCTGAAAATGCGATTAAGgtt                                                                        >  1:4281511/1‑138 (MQ=255)
                                                                 cATACCTATACCAGTCAGGAGGCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTGATTTTTTTTTTTTT‑TTCCCTGAGAAGAGAGTGGCGCGAGGGGATATC‑TTTTCTTGCTGAACAGGGGAGTTAGttt                                                                        >  1:5151846/1‑138 (MQ=255)
                                                                    aCCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAgcgc                                                                                                                   <  1:1524475/93‑1 (MQ=255)
                                                                     ccTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAAc                                                                                      <  1:791720/120‑1 (MQ=255)
                                                                      cTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCag                                                                                                                 <  1:761448/93‑1 (MQ=255)
                                                                        ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCTTTTTTTTTTTTTT‑TGCCCTGAGGAGGGAGGGGGGGGGGGGGGTATC‑TTGTCTGACTGTAATGGCGAGTAAGTTTCCGCGTa                                                                 >  1:4033827/1‑138 (MQ=255)
                                                                         taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGTGATTAAGTTTCCGCGTAcc                                                               <  1:2345191/139‑1 (MQ=255)
                                                                         taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAcc                                                               <  1:431162/139‑1 (MQ=255)
                                                                         taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAcc                                                               <  1:2964910/139‑1 (MQ=255)
                                                                         taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAcc                                                               <  1:3793355/139‑1 (MQ=255)
                                                                         taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCACTTTTTTTTTTTT‑TGCCCTTAGAAGGGAGCGCCGGGAGGGGGTATC‑TTGCCTGACTGGACTGGCGGTTAAGGTTTCGCGGAc                                                                >  1:4118265/1‑138 (MQ=255)
                                                                          cacAGTCAGGAGTCATTTCAGGATCCCATGTCGCGGATCACGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGTTTAAATTTCCGCGTAccc                                                              <  1:4106762/137‑1 (MQ=255)
                                                                          aCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAccc                                                              <  1:1028108/139‑1 (MQ=255)
                                                                          aCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAccc                                                              <  1:4801517/139‑1 (MQ=255)
                                                                             aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCCTGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGc                                                           >  1:384079/1‑139 (MQ=255)
                                                                              gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTT‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTTACTGGACTGGCGATTTAGTTTTCGCGTATCCcgcg                                                          >  1:4616657/1‑139 (MQ=255)
                                                                              gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTC‑TGCCCTGAGAAGGGGGCGTAGGGAGGGGATATC‑TTGCATCCCCCGACACGCGTTTAAATTTCCGCGGAcccccgg                                                          >  1:93778/1‑135 (MQ=255)
                                                                              gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTC‑TGCCATGGAAAGGGAGCGCGGAGAGGGATTATT‑TTGCCTGACTGAACTGGGGAGTAAGTTTCCGCGGACCCGGCg                                                          >  1:375417/1‑139 (MQ=255)
                                                                              gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTC‑TTCCATGAGAAGTGAGGGCAGAGCGGGATTa                                                                                                       >  1:1407210/1‑95 (MQ=255)
                                                                              gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCATGAGAAGGGAGGGGAGGGAGGGGTTATC‑TTTGCTGTCTGGACTGGCGATTTAGTTTTCGCGGATCCGGCg                                                          >  1:3340096/1‑139 (MQ=255)
                                                                              gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TTCCATGAGAAGTGAGCGCAGCGAGGGGTTTTC‑TTTTCTGACTGTACTGGCGGTTAAGTTTTCGCGTACCCGGCg                                                          >  1:3013656/1‑139 (MQ=255)
                                                                              gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCCTTTTTTCTTTTTT‑TGCCATGAGAAGGGAGGGCAGAGAGGGATTATC‑TTGCCTTAATGAAATGGCGGTTTAGTTTCCGCGTACCCGGCg                                                          >  1:2294266/1‑139 (MQ=255)
                                                                               tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTCTTCCCCTGGGAAG‑GAGGGGCGACAGGGGTTAACGTTCCTTGACT‑AACTGGGGGTTAAGGTTCCGCGGAACCcgcgg                                                         >  1:4554883/1‑138 (MQ=255)
                                                                               tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCATTTTTTTTTTTC‑TTCCAAGAGAAGTGAGCGCCGAGAGGGAGTATC‑TTGACTGACTGAACTGGCGATTAAGGTTCCGAGTACCCGGCGt                                                         >  1:1054292/1‑139 (MQ=255)
                                                                               tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCCTGAGAAGGGGGCGCAGAGAGGGATTATT‑TTTCCTGACTGAACTGGGGATTTAGTTTTCGCGTACCCcgcgg                                                         >  1:3679494/1‑138 (MQ=255)
                                                                               tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TTCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCcgc                                                                    >  1:398321/1‑128 (MQ=255)
                                                                               tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCgg                                                         >  1:2335148/1‑138 (MQ=255)
                                                                               tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTT‑TGCCATGAGAAGGGGGCGCAGAGGGGGAGTAAC‑TTTCCTGAGTGaa                                                                                       >  1:1259990/1‑109 (MQ=255)
                                                                                cAGGAGTCATTTCAGGATTCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGtt                                                        <  1:2136922/139‑1 (MQ=255)
                                                                                cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTTATTTTTTTTTTTTT‑TGCCATGAGAAGTGAGGGCCGGGAgggggtt                                                                                                       >  1:3343502/1‑89 (MQ=255)
                                                                                cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCCTGAGAAGTGAGGGCCGAGAGGGGTTATT‑TTTTctgactgga                                                                                       >  1:2757292/1‑106 (MQ=255)
                                                                                cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTT‑TGCCATGAGTAGGGAGCGCGGAGAGGGGGTATT‑TTGCCTGACTGAACTGGGGGTTAAGTTTCCGCGTAccccggggt                                                        >  1:3070317/1‑133 (MQ=255)
                                                                                cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGc                                                                                                                                   <  1:1208058/65‑1 (MQ=255)
                                                                                cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGGCATGAGAAGTGAGCGCAGAGAGGGGTTATT‑TTGCCTGACTGAAATGGCGATTAAGGTTTCGCGTACCCGGCGtt                                                        >  1:1969515/1‑139 (MQ=255)
                                                                                cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCg                                                          <  1:4545445/137‑1 (MQ=255)
                                                                                cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCg                                                          <  1:2696567/137‑1 (MQ=255)
                                                                                 aGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTT‑TTCCATGGGAAGGGAGGGCCGGGAGGGGTTATT‑TTGCCTGACTGAACTGGCGATTAAGGTTCCGCGTACCCGGCGgtt                                                       >  1:460492/1‑139 (MQ=255)
                                                                                   gAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTttttttttttc‑t                                                                                                                                     >  1:2437691/1‑60 (MQ=255)
                                                                                   gAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TGGCCTGAGAAGTGAGCGCAGAGAGGGAGTATC‑TTGCCCTTCTTGACTGGCGGTTTAGTTTCCGCGGACCCGGCGttttg                                                     >  1:3500527/1‑137 (MQ=255)
                                                                                    aGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCCTGAGAAGAGAGCGCAGAGGGGGGTTTTC‑TTTCCTGAATGAAATGGCGATTAAGTTTTCGCGTACCCGGCGTTTAGt                                                    >  1:787394/1‑139 (MQ=255)
                                                                                       cATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCCTGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTAt                                                 <  1:4893280/139‑1 (MQ=255)
                                                                                        aTTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCa                                                                                                                  <  1:1350140/74‑1 (MQ=255)
                                                                                         tttCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTg                                               <  1:3793407/139‑1 (MQ=255)
                                                                                          ttCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAAc                                                                                      <  1:2324594/99‑1 (MQ=255)
                                                                                             aGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTT‑TTCCATGAGAAGGGAGGGCAGAGAGGGGTTATC‑TTGTCTTTCTTAACTTGCGGTTTAGTTTTCGCGTACCCGGCGTTTTGTTATTGCggg                                           >  1:3801793/1‑138 (MQ=255)
                                                                                              ggATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCg                                             <  1:928533/136‑1 (MQ=255)
                                                                                                atgtcatgtcGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATCAGAAGTTAGCTCAGAGAGGGATAATC‑TTGCCTGACTTCACTGGTGATTAAGTTCCCGCGTACCCGGTGTTTAGTTTTTGCGga                                           <  1:4820803/136‑1 (MQ=255)
                                                                                                 tGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatga                                        <  1:1912302/138‑1 (MQ=255)
                                                                                                 tGCCAAGTCGAGGCTCTCGTGTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGAATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTGCGCGTACCCGGCGGTTAGTTATTGCGgatga                                        <  1:3428172/138‑1 (MQ=255)
                                                                                                   ccATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCg                                                          <  1:1919709/118‑1 (MQ=255)
                                                                                                        tCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTT‑TTCCATGAGAAGTGAGCGGAGGGGGGGGTTATC‑TTGCCTGACTGAACTGGCGGTTTAGTTTCCGCGGACCCCGCGTTTTGGTTTTGCGggtgatgatttct                                >  1:3510355/1‑135 (MQ=255)
                                                                                                                    tttGCGGCGGTCCTTTTTTCTTTTTC‑TGCCATGAGAAGGGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGc                                                                                  >  1:3228053/1‑77 (MQ=255)
                                                                                                                        cggcggTCATTTTTTTTTTTTT‑TGCCATGGGAAGAGAGCGCAGAGAGGGGTTTTC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATTGTATTTAAACCCGGCTGGtttg                >  1:1444208/1‑137 (MQ=255)
                                                                                                                         ggcggTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGt               <  1:2183021/139‑1 (MQ=255)
                                                                                                                         ggcggTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGt               <  1:573755/139‑1 (MQ=255)
                                                                                                                         ggcggTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGt               <  1:2748509/139‑1 (MQ=255)
                                                                                                                         ggcagTCATTTTTTCTGTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATGAAGTTTCCGCGTACCCGGCGTATAGTTATTGCGGATGATGATATTGAGGATCGGCTGAGTGGt               <  1:3626583/139‑1 (MQ=255)
                                                                                                                            ggTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCa            <  1:747237/139‑1 (MQ=255)
                                                                                                                             gTCATTTTTTTTTTTTC‑TGCCCTGAGAAGTGAGCGCAGAGGGGGGTTATC‑TTGCCTGACTTTACTGGGGGTTAAGTTTCCGCGGACCCGGGGTTTGGTTATTGCGGGAGGTGATATTGAAGGTCGGCTGAGTGGGTCAt           >  1:3174828/1‑139 (MQ=255)
                                                                                                                                      tctttttc‑tGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAt  <  1:1825151/139‑1 (MQ=255)
                                                                                                                                      tctttttc‑tGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAt  <  1:2253363/139‑1 (MQ=255)
                                                                                                                                      tctttttc‑tGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAt  <  1:2958008/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                           
GCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATC‑TTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAT  >  CP009273/4594026‑4594298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑