Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	1,783,016	G→A	D109N (GAT→AAT)	aroH →	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	1,783,016	0	G	A	100.0%	284.5 / NA	82	D109N (GAT→AAT)	aroH	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (49/33);  total (49/33)

GATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATT  >  CP009273/1782881‑1783147                                                                                                                                        |                                                                                                                                    gATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAAt                                                                                                                                   >  1:1469385/1‑138 (MQ=255)      cACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGAt                                                                                                                             >  1:691804/1‑139 (MQ=255)      cACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGAt                                                                                                                             >  1:2811211/1‑139 (MQ=255)      cACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGAt                                                                                                                             >  1:5020697/1‑139 (MQ=255)      cACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGAt                                                                                                                             >  1:1857951/1‑139 (MQ=255)      cACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGAt                                                                                                                             >  1:1583984/1‑139 (MQ=255)         cGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTa                                                                                                                          <  1:4343840/139‑1 (MQ=255)            tGCAATGGAGTACGCCCCCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCa                                                                                                                                <  1:1150421/130‑1 (MQ=255)             gCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACg                                                                                                                      >  1:663851/1‑139 (MQ=255)             gCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACg                                                                                                                      >  1:3670680/1‑139 (MQ=255)             gCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACg                                                                                                                      >  1:4280690/1‑139 (MQ=255)              cAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACg                                                                                                                      >  1:2520392/1‑138 (MQ=255)                 tGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAg                                                                                                                  <  1:1870833/139‑1 (MQ=255)                   gAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCt                                                                                                                >  1:3373124/1‑139 (MQ=255)                      tACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACg                                                                                                                      >  1:3731926/1‑130 (MQ=255)                        cGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCgg                                                                                                           >  1:2315864/1‑139 (MQ=255)                           cACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGt                                                                                                         <  1:4620547/138‑1 (MQ=255)                              ccGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTaaa                                                                                                      >  1:4191001/1‑138 (MQ=255)                                        tCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCATGGTCTgg                                                                                           >  1:1980878/1‑139 (MQ=255)                                          gCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGGCTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGCAAATCAAGGTCTGGa                                                                                          >  1:3679198/1‑138 (MQ=255)                                          gCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGa                                                                                          >  1:3316295/1‑138 (MQ=255)                                           cTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGa                                                                                          >  1:369816/1‑137 (MQ=255)                                             gcgcAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTg                                                                                      >  1:2289882/1‑139 (MQ=255)                                                cAACCAGTACCAGTCACGGCTGGAAATCTTAATGCGCACCTATTTTGAAAAACCACGACCTGTTGTCGGCTGGAAAGGACTACTCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGgc                                                                                    >  1:3956296/1‑138 (MQ=255)                                                   ccagtaccagtCCCGGCTGGAAATCTTAATACGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACAAATCTCCAATCCTGATTTAACCGGCCACTATCgg                                                                                                           <  1:1970014/112‑1 (MQ=255)                                                        accagtCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAAtt                                                                           <  1:3750417/139‑1 (MQ=255)                                                        accagtCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAAt                                                                            <  1:1610330/138‑1 (MQ=255)                                                        accagtCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAAt                                                                            <  1:2407935/138‑1 (MQ=255)                                                               aCGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGAt                                                                                                                             >  1:2601824/1‑82 (MQ=255)                                                                 ggCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACa                                                                  <  1:595206/139‑1 (MQ=255)                                                                 ggCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACa                                                                  >  1:1088968/1‑139 (MQ=255)                                                                 ggCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACa                                                                  >  1:216996/1‑139 (MQ=255)                                                                    tGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGt                                                               >  1:4034804/1‑139 (MQ=255)                                                                                tGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTggg                                                   <  1:1736043/139‑1 (MQ=255)                                                                                   gcACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCg                                                 >  1:3458009/1‑138 (MQ=255)                                                                                     aCCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATc                                                                                                                                  <  1:4254621/55‑1 (MQ=255)                                                                                     aCCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTg                                                     <  1:4593741/132‑1 (MQ=255)                                                                                     aCCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTc                                               >  1:1430969/1‑138 (MQ=255)                                                                                       cTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCgg                                                                                                           <  1:1586295/76‑1 (MQ=255)                                                                                          ttttGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATc                                                                                                                                  <  1:4341711/50‑1 (MQ=255)                                                                                          ttttGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCaa                                                                              <  1:3735393/102‑1 (MQ=255)                                                                                            ttGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACcgc                                       >  1:1401885/1‑139 (MQ=255)                                                                                            ttGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACcgc                                       >  1:2550307/1‑139 (MQ=255)                                                                                               aaaaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTaaa                                                                                                                        >  1:1674130/1‑55 (MQ=255)                                                                                               aaaaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCaa                                           >  1:2013965/1‑132 (MQ=255)                                                                                               aaaaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGa                                     >  1:3526115/1‑138 (MQ=255)                                                                                                 aaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACg                                                                                                 >  1:4167018/1‑76 (MQ=255)                                                                                                 aaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCg                                  >  1:652552/1‑139 (MQ=255)                                                                                                  aaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGa                                 <  1:37984/139‑1 (MQ=255)                                                                                                   aCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAg                                <  1:5129064/139‑1 (MQ=255)                                                                                                   aCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAg                                <  1:3982938/139‑1 (MQ=255)                                                                                                    ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTaaa                                                                                                                        >  1:1761383/1‑50 (MQ=255)                                                                                                    ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTa                                                                    >  1:1153888/1‑102 (MQ=255)                                                                                                    ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGt                               >  1:4349908/1‑139 (MQ=255)                                                                                                    ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGt                               >  1:882358/1‑139 (MQ=255)                                                                                                    ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGt                               >  1:2277357/1‑139 (MQ=255)                                                                                                    ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCGGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGCCCGCGt                               >  1:4616258/1‑139 (MQ=255)                                                                                                     cACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCa                                                                                                   <  1:5053017/70‑1 (MQ=255)                                                                                                     cACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGt                               >  1:3982545/1‑138 (MQ=255)                                                                                                     cACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAACTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGtt                              <  1:794362/139‑1 (MQ=255)                                                                                                     cACGAACTGTTGTCGGCTGGAAAGGAATAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGtt                              <  1:3234784/139‑1 (MQ=255)                                                                                                       cGAACTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAACTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGtt                              >  1:3376378/1‑137 (MQ=255)                                                                                                        gAACTTTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCt                           <  1:1097626/139‑1 (MQ=255)                                                                                                          aCTGTTGTCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGTTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTc                          <  1:3246055/138‑1 (MQ=255)                                                                                                            tgttgtCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTg                                                     <  1:2762972/109‑1 (MQ=255)                                                                                                              ttgtCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCa                                                                                                   <  1:3605761/61‑1 (MQ=255)                                                                                                               tgtCGGCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAg                                                                                         >  1:2474126/1‑70 (MQ=255)                                                                                                                   ggCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTg                 >  1:3847320/1‑138 (MQ=255)                                                                                                                   ggCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGa                <  1:1265991/139‑1 (MQ=255)                                                                                                                   ggCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGa                <  1:876108/139‑1 (MQ=255)                                                                                                                   ggCTGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTAGCGGGGAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTg                 >  1:3052032/1‑138 (MQ=255)                                                                                                                      tGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCaa                                           >  1:180088/1‑109 (MQ=255)                                                                                                                      tGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCg             >  1:1263749/1‑139 (MQ=255)                                                                                                                      tGGAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCg             >  1:2552381/1‑139 (MQ=255)                                                                                                                        gAAAGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAg                                                                                         >  1:1024047/1‑61 (MQ=255)                                                                                                                         aaaGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt           <  1:1886071/138‑1 (MQ=255)                                                                                                                         aaaGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt           <  1:1150741/138‑1 (MQ=255)                                                                                                                         aaaGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt           <  1:791103/138‑1 (MQ=255)                                                                                                                         aaaGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt           <  1:4164715/138‑1 (MQ=255)                                                                                                                         aaaGGACTAATCTCCAATCCAGATTTAAACCGCAGCTTTCGGGTAAATCCCGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt           <  1:469579/138‑1 (MQ=255)                                                                                                                          aaGGACTAATCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCa         <  1:3464254/139‑1 (MQ=255)                                                                                                                                  aTCTCCAATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGCCAGTTTAtt  >  1:192175/1‑138 (MQ=255)                                                                                                                                        |                                                                                                                                    GATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATT  >  CP009273/1782881‑1783147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑