| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1 = | 0 (0.000) | 23 (0.000) +TGTCTAAC |
3/214 | 3.3 | 0.97% | coding (792/792 nt) | aadA | aminoglycoside adenylyltransferase (Murphy, 1985) |
| ? | KX077536 | = 965 | 5071 (1.540) | intergenic (–/‑134) | –/unknown | –/BLA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 1493 total aligned reads displayed.
GTCGGCAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/12‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCACTAGTAACA < KX077536/965‑844 |||||||| TCGGCAAATAATGTCTAACGAGCTCGCTTGGACTCCTGTTGATAGAACCAGTAATGACCTCAGAACTCCATATGGATTTGTTAAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCACTAGTAA > 1:2652612/1‑139 TGTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTG < 1:3096373/109‑1 TGTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCG < 1:1497346/96‑1 TGTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGA < 1:1357886/46‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTGAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGG < 1:4268123/92‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGTTTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTG < 1:2837944/108‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCAC < 1:2132734/121‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCA < 1:825530/116‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCC < 1:3934664/115‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCC < 1:1281224/115‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCC < 1:4202123/115‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCC < 1:3275254/115‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGT < 1:3846842/107‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGT < 1:733946/107‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTAT < 1:1441649/103‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTAT < 1:3018622/103‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTA > 1:2861052/1‑102 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTT < 1:3635237/97‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCG < 1:1757828/95‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGG < 1:3529184/93‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCAGCCGGGCGTTTTTTATTGGTGAGAATCAAAG < 1:2173806/118‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAA < 1:1657991/75‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCA < 1:3207845/72‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGA < 1:409735/64‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTG < 1:866563/62‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATC < 1:1729830/60‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACT < 1:2604715/55‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACT < 1:888743/55‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAAC < 1:3354945/54‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAA < 1:1844215/53‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCA < 1:2036005/50‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTC < 1:3401802/49‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCGCAGAACTCCATCTGGATTTGTTC < 1:3598706/71‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGAC < 1:1899015/46‑1 GTCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:969092/1‑41 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCA < 1:1179956/119‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCA < 1:2693986/119‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAAT > 1:2008960/1‑112 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAA > 1:235336/1‑111 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAG < 1:2306782/109‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAG < 1:1802670/109‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGA > 1:4040822/1‑108 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTT < 1:1006874/96‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGC < 1:1261482/93‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGG < 1:2782598/92‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGC > 1:2804663/1‑88 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGC > 1:932683/1‑88 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTT > 1:646698/1‑83 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGG > 1:2963586/1‑81 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCT < 1:3891752/78‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACG < 1:3739720/76‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAA > 1:3699262/1‑74 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGG > 1:3047997/1‑62 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGAC > 1:2995170/1‑45 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:495401/1‑40 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:243254/1‑40 TCTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGT < 1:2395397/39‑1 TCTAACGAGCTCGCTTGGACTCCTGTTGATAAATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAG < 1:250254/109‑1 CTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCACTAGT > 1:4309590/1‑123 CTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTT > 1:1587446/1‑68 CTAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:677120/1‑39 TAACGAGCTCGCTTGGACTTCTGTTGATAGATCCAGTAATGACCCCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCA < 1:2227948/113‑1 TAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTTATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGTTTGCCGCCGGGCGTTTTTTATTGGTGAG < 1:2269919/107‑1 TAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCAC < 1:3559325/118‑1 TAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTG > 1:1204841/1‑102 TAACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCG < 1:1405955/92‑1 AACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGG > 1:3461032/1‑59 AACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:2560057/1‑37 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCACTAGT > 1:1696319/1‑120 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCC > 1:3160415/1‑110 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGC > 1:1092160/1‑84 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTT < 1:602478/79‑1 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAA > 1:475799/1‑70 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATC < 1:3128546/55‑1 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAA < 1:3500396/48‑1 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:3773326/1‑36 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:448840/1‑36 ACGAGCTCGCTTGGACTCCTGTTGATAGATCCAGGAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCA > 1:4227145/1‑115 ACGAACTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGAGTTTTTTATTGGT > 1:2738938/1‑102 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCACTAGT > 1:1321699/1‑119 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCACTAGT > 1:708419/1‑119 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCACTAGT > 1:1130961/1‑119 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCAATAGT > 1:2463629/1‑119 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAAT > 1:3435191/1‑107 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAA > 1:573088/1‑106 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTG > 1:1628739/1‑99 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTA > 1:2106152/1‑96 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTA > 1:519038/1‑96 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGG > 1:187822/1‑86 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCC > 1:1974870/1‑84 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGAT > 1:4143349/1‑59 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGAT > 1:2077611/1‑59 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGG > 1:3807666/1‑57 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCAATATGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGAGTTTTTTATTGGTGAGAATC > 1:3304880/1‑108 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACT > 1:3973420/1‑49 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAA > 1:1534373/1‑47 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:4009567/1‑35 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:786523/1‑35 CGAGCTCGCTTGGACTCCTGTTGATAGATCCAGTA > 1:1053990/1‑35 CGAGCTCGCTTGGACTCCTGTTGATAGATCAAGTAATGACCTCAGAACTC > 1:2907698/1‑50 |||||||| GTCGGCAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/12‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCATCTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGAGAATCCAAGCACTAGTAACA < KX077536/965‑844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |