| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4161774 | 23 (0.330) | 7 (0.000) +T |
4/228 | 3.2 | 1.4% | intergenic (+90/‑211) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | KX077536 | 37 = | 1003 (0.300) | intergenic (–/‑1062) | –/unknown | –/BLA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTT > CP009273/4161637‑4161909 | gaggTAGGGAGGGGGCTCCCCATGCGAGAGTAGGGGACTGCCAGGAATCAAATAAAACGAAAGGCAAAGTCGAAAGACGGGGCCTTTCGTTTTATCTGTTGTTTGCAGGTGAACGATCTCCTGAGTAGGACAAATccg > 1:2986222/3‑138 (MQ=11)aTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccg > 1:1948097/1‑138 (MQ=34) gggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAt > 1:2200124/1‑139 (MQ=34) tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACTAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTGGTTTGTCGGTGAACTCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑Gaa < 1:564729/139‑1 (MQ=255) tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGATAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTTGGTGAACGCTCTCCTTAGTAGGACAAATCCGCCGGGAGCGGATTT‑Gaa < 1:814113/139‑1 (MQ=255) tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑Gaa < 1:26806/139‑1 (MQ=34) ccccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAAc > 1:1127153/1‑139 (MQ=34) agTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCa > 1:91257/1‑139 (MQ=32) agTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCa > 1:4193500/1‑139 (MQ=32) agTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCa > 1:2848896/1‑139 (MQ=32) gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCa < 1:2353817/138‑1 (MQ=32) aGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCaa < 1:2347275/137‑1 (MQ=32) gAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGTTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAACGGc < 1:3765641/138‑1 (MQ=17) cttaGTCGAAAGGCTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAg < 1:1920844/78‑1 (MQ=0) cTGAGTAGGAAAAACCCGCGGGGGGGGAATTG‑GAACGTTGCGAAGCAACGGCGGGGGGGGTGGCGGGCAGAACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGt < 1:2069018/139‑1 (MQ=11) gTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCt > 1:2442944/1‑139 (MQ=34) tAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCt > 1:1150316/1‑138 (MQ=34) aGGACAAATCCGCCGGGGGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCt < 1:925514/137‑1 (MQ=21) gACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAAGGGCCCGGAGGGTGGCGGGCAGGACCCCCGCCATAAACTGGCAGGCAACAAAGTAAGCAGAAGGCCATCCTGGCGGAAGGCCTTTTTGCGTTTCTACaa > 1:2432879/1‑139 (MQ=11) gACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACaa > 1:3097460/1‑139 (MQ=38) accaccccggcgGGGGCGGATTTGGAGCGTGGCGAGGCACCGGCCGTGGGGGGGGCGGGCGGCCCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACa < 1:3321888/132‑1 (MQ=11) aTCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTTTACAAActct > 1:1714774/1‑139 (MQ=255) aTCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCAATCCTGACGGATGGCCTTTTTGCGTTTCTACAAActct > 1:3533489/1‑139 (MQ=255) ccgccgGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCtt > 1:2943793/1‑138 (MQ=255) cgcggGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGGGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACa < 1:694449/130‑1 (MQ=255) | ATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTT‑GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTT > CP009273/4161637‑4161909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |