| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,380,362 | 0 | C | T | 23.7% | 205.6 / 24.5 | 97 | intergenic (+52/‑51) | yfbL/yfbM | putative peptidase/DUF1877 family protein |
| Reads supporting (aligned to +/- strand): ref base C (16/58); new base T (23/0); total (39/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.35e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCGGTGATACCGCAGACAGATTGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGATGGATAAT > CP009273/2380225‑2380499 | ccGGTGATACCGCAGACAGATTGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTcc < 1:3836777/139‑1 (MQ=255) gTGATACCGCAGACAGATTGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCC‑AAAAAAACGACA‑TGCACATTTTA‑TTTTTCCTc > 1:796036/1‑139 (MQ=255) gATACCGCAGACAGATTGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCAt < 1:2669848/139‑1 (MQ=255) cagacagaTTGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCC‑GAAAAAACGACA‑TGCACATTTTA‑TTTTTCCTCATCTGtttt > 1:1583645/1‑139 (MQ=255) gacagaTTGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCC‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTaa > 1:2027135/1‑139 (MQ=255) gacagaTTGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCCA‑GAAAAAACGGCA‑AGCACATTTTA‑TTTTTCCCCATCTGTTTTaa > 1:1349745/1‑139 (MQ=255) tGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGa < 1:270826/139‑1 (MQ=255) gAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGaa < 1:4172255/139‑1 (MQ=255) ttATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑a < 1:2655404/139‑1 (MQ=255) ttATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑a < 1:3798169/139‑1 (MQ=255) ttATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑AGCACATTTTA‑TTTTCCCTCATCTTTTTTAAGAGGCGAAAC‑a > 1:1704986/1‑139 (MQ=255) cTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACgg < 1:2431611/138‑1 (MQ=255) cTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCAAGGAAAAAAGAAAA‑TCTACA‑TTTA‑TTTTTCCGCCTATGTTTTGAAAAGTGAAAA‑ATGAAATTaaaaagg > 1:3842822/1‑135 (MQ=255) cAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACggagg < 1:2172333/139‑1 (MQ=255) tAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATg < 1:3502008/121‑1 (MQ=255) tGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCt < 1:3054551/93‑1 (MQ=255) tGGTGTTATAAATTTGTTATACAACAGTAAATAATTAAAATTTCTCGAGGGGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAA‑ATGAAATTCAACGGAGGAAaaataaat < 1:1879154/138‑1 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGACA‑TGCACATTTTT‑TTTTCCCTCTTCTGTTTTAAAGAGGGAAAC‑AAGAAAATTAACAGGGGAAAAAAAAATgg > 1:1531512/1‑139 (MQ=255) gtgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCC‑GAAAAAACGGCA‑TGCACATTTTA‑TTTTTCCTCATCTGTTTTTAGATGCGAAAC‑ATGAAATTCAACGGGGGAAAAATAAAAggg > 1:2091079/1‑139 (MQ=255) gtgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGACA‑AGCACATTTTT‑TTTTTCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGGAAAAAAAATtgg > 1:1464428/1‑139 (MQ=255) gtgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCCT‑TGAAAAACGACATTGAACA‑TTTC‑TTTTTTCACATCGGTATTAAAAAGGGAAAC‑ATGAAATTTAAATGACGAAAAAAAAAAggg > 1:1898767/1‑139 (MQ=255) gtgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGACCA‑AAAAAAAAGAAA‑AGGACATTTTA‑TTTTTCCCCAAATGGTTTTAGATGAGAGAA‑AAGAAATTTAAAGGGGGAAAAAAAAATggg > 1:1093679/1‑139 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTTCA‑GAAAAAACGACA‑TTCACATTTTA‑TTTTCCCTCATCTGTTTTTAGATGCGGAAC‑ATGAAATTTaaag > 1:1330764/1‑119 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCg < 1:385845/104‑1 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGaaaa < 1:2689434/129‑1 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAaaataaa < 1:2754430/134‑1 (MQ=255) aaagaaaaCTTTTGTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGCCC‑TTCACATTTTA‑TTTTCCCCCATCTGTTGTAAGATGCGAACA‑ATGAAACTCAACGGAGGAAAAATAAATGGGa < 1:1304275/133‑1 (MQ=255) gtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGa < 1:2189974/138‑1 (MQ=255) ttATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGtttt < 1:4143919/94‑1 (MQ=255) taACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTT‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAAAGGAGGAAAAAAAAATGGGAATGAt > 1:1153352/1‑139 (MQ=255) taACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGAt < 1:3321368/139‑1 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTTCCTCATCTGTTTTTAAATGCGAAAC‑ATGAAATTCAACGGGGGAAAAATAAATGGGAATGATTGGCt > 1:466640/1‑139 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTTCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGGATGAttctgt > 1:581951/1‑135 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGATA‑TACAAATTTTT‑TTTTTTCTCCCCTGTTTTTAGAAGAGAAAA‑AAGAAAAATAACGGAGGGAAAAAAAATTGGAAGGATTGGCt > 1:2498540/1‑139 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGACA‑TGCACATTTTA‑TTTTTCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAAAGGAGGAAAAATAAATAGGa > 1:516857/1‑129 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGACA‑TGCACAATTTT‑TTTTCCCTCATCTGTTTTTAGATGCGGAAA‑ATGAAATTCAAAGGAGGAAAAATAAATGGGGATGATTGGCt > 1:1149794/1‑139 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGACA‑TGCAAAATTTA‑TTTTTCCTCATCTGTTTTTAGATGCGGAAC‑ATGAAAATCAACGGAGGAAAAATAAATTGGAATGATTGGCt > 1:16627/1‑139 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGTTG‑GAACAAAAGCAA‑TGCACCTTTTATTTTTTTCTC‑TCCTTTTTTAGATGGGGAACAATGAAATTCACCGGGGGAAAATAAACTGGGACTGTTTgcg > 1:4333644/1‑137 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGTCC‑GAAAAAAAGAAA‑AGCACATTTTA‑TTTTTTCTCATCTGTTTTTAAATGCGAAAC‑ATAAAATTCAACGGAGGGAAAATAAAAGGGGATGAtttggt > 1:2315311/1‑135 (MQ=255) ttATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCAt < 1:925467/76‑1 (MQ=255) tataCAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTAttt < 1:142206/139‑1 (MQ=255) taCAACAGTAAATAATAAAAATTTCTCGAGGCGAGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTg < 1:1496006/139‑1 (MQ=255) caacaGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCa < 1:1883067/139‑1 (MQ=255) aacaGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCAt < 1:124645/70‑1 (MQ=255) caGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCAt < 1:3370894/68‑1 (MQ=255) caGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATggg < 1:2996461/117‑1 (MQ=255) caGTAAATAATAAAAATTTCTCGAGGCGGGGCCA‑GAAAAAACCACA‑AGCACATTTTT‑TTTTCCCTCATCTGTTTTAAGAAGCGGAAC‑ATGAAATTCAAAGGAGGAAAAATAAATGGGGAAGATTGGCTATTTTGCAGaa > 1:1459186/1‑139 (MQ=255) gTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGGCA‑TGCACATTTTT‑TTTTCCCTCATCTGTTTTTAGATGCGGAAC‑ATGAAATTCAACGGAGGGAAAATAAATGGGGATGATTTGCTATTTTTCAGAAAt > 1:586930/1‑139 (MQ=255) gTAAATAATAAAAATTTCTCGAGGCGGGGCCC‑GAAAAAACCACA‑TGCACATTTTT‑TTTTTCCTCTTCTGTTTTAAAATGGGGAAA‑ATGAAATTTAAAGGAGGAAAAATAAATGGGAAAGATTGGCTATTTTGCAGAAAt > 1:192157/1‑139 (MQ=255) tAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCAt < 1:1919547/65‑1 (MQ=255) aataatAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGa < 1:2759396/139‑1 (MQ=255) ataataAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGAc < 1:2164125/139‑1 (MQ=255) taataaAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGaa < 1:2036877/112‑1 (MQ=255) aataaAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGACA‑TGCACAATTTA‑TTTTTCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTTAACGGAGGGAAAATAAATGGGGAAGATTGGCTATTTTGCAGAAATTGAATc > 1:422600/1‑139 (MQ=255) aataaAAATTTCTCGAGGCGGGGCCA‑GAAAAAACGACA‑AGCACATTTTT‑TTTTTCCTCATCTGttttttg > 1:2297776/1‑67 (MQ=255) taaAAATTTCTCGAGGCGGGTCCC‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTTCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAAATCAACGGAGGAAAAATAAAAGGGAATGATTTGCTATTTTGCAGAAATTGACTCAg > 1:1390088/1‑139 (MQ=255) taaAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGAt < 1:1714257/113‑1 (MQ=255) taaAAATTTCTCGAGGCGGGTCCA‑GAAAAAACGACA‑TGCACATTTTT‑TTTTTCCTCCTCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGGAAAAAAAATTGGGATTATTGGc > 1:824370/1‑117 (MQ=255) taaAAATTTCTCGAGGCGGGGCCC‑GAAAAAACGACA‑TGCCCCATTTA‑TTTTTCCTCATCTGTTTTAAg > 1:1199426/1‑68 (MQ=255) aaaaaTTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGa < 1:2153365/139‑1 (MQ=255) aaaaaTTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGa < 1:3511822/139‑1 (MQ=255) aaaaaTTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGa < 1:1631022/139‑1 (MQ=255) tctcGAGGCGGGTCCA‑GAAAAAGGGACA‑TGCACATTTTA‑TTTTTCCCCATCTGTTTTAAGATGCGAAAA‑ATGAAATTTAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAAAtt > 1:1545017/1‑139 (MQ=255) tctcGAGGCGGGTCCA‑GAAAAAACGACA‑TGCACATTTTT‑TTTTTCCCCATCTGTTTTAAGATGCGAAAA‑ATGAAATTTAACGGGGGGAAAAAAAATGGGGAAGATTGGGTATTTTGCAGAAATTGACTCAGAAAAAAtt > 1:1340602/1‑139 (MQ=255) cGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCaa < 1:2009856/137‑1 (MQ=255) cGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCaa < 1:3845060/137‑1 (MQ=255) gTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATggg < 1:1349357/88‑1 (MQ=255) tCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTg < 1:399958/104‑1 (MQ=255) tCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCt < 1:543062/138‑1 (MQ=255) ccA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCtt < 1:3985596/138‑1 (MQ=255) aaaaGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGTGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGt < 1:1672311/137‑1 (MQ=255) aGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGGAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTAAGAAAAGATTAACCAACTGCTTGAGTCt > 1:2822275/1‑136 (MQ=255) aGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGc > 1:3520565/1‑88 (MQ=255) aGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCt > 1:2715615/1‑136 (MQ=255) aGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCt > 1:1489453/1‑136 (MQ=255) gCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGa > 1:2572669/1‑104 (MQ=255) aCA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGa < 1:3066772/107‑1 (MQ=255) tGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGaa < 1:1387921/105‑1 (MQ=255) atttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAAc < 1:61876/134‑1 (MQ=255) atttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTg < 1:3324912/139‑1 (MQ=255) atttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTg < 1:1867389/139‑1 (MQ=255) atttta‑ttttCCCTCATCTGTTTTAAGATGCCAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGGCTACTGAAAAACCTTTg < 1:535262/139‑1 (MQ=255) atttta‑ttgtCTCAAATAGGTTTTCAGATGCGAAAT‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTAGGTTGCAGAAAATGACTCAGAAAAGATTATCCAACTGCTTTAGTGCCCTGAAAAATCTTTg < 1:4068828/139‑1 (MQ=255) atttta‑tgttCCCTTATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAAAGATTGGCTAATTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTg < 1:2002716/139‑1 (MQ=255) atttaa‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTg < 1:3702317/139‑1 (MQ=255) ttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGTGAATGATTGGCTATTTTGCAGAAATTGCCTCAGAAAAGATTAACCAACTGCTTCAGTCTACTGAAAAACCTTTGAt < 1:1908479/139‑1 (MQ=255) ttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAAc > 1:894771/1‑107 (MQ=255) ttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGAt < 1:2365194/139‑1 (MQ=255) ttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGAt < 1:2595289/139‑1 (MQ=255) ttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGAt < 1:4260741/139‑1 (MQ=255) ttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGAt < 1:3561206/139‑1 (MQ=255) ttta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGAt < 1:3630156/139‑1 (MQ=255) tta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGATg < 1:1449083/139‑1 (MQ=255) ta‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGATgg < 1:2399706/139‑1 (MQ=255) a‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAAcc > 1:3559039/1‑105 (MQ=255) a‑ttttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGATGGa < 1:390408/139‑1 (MQ=255) tttCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGATGGata > 1:3273542/1‑139 (MQ=255) tCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGATGGataat < 1:3635385/139‑1 (MQ=255) cccTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGATGGa > 1:2235106/1‑134 (MQ=255) | CCGGTGATACCGCAGACAGATTGAATTATCAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACA‑TGCACATTTTA‑TTTTCCCTCATCTGTTTTAAGATGCGAAAC‑ATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGACTCAGAAAAGATTAACCAACTGCTTGAGTCTACTGAAAAACCTTTGATGGATAAT > CP009273/2380225‑2380499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |