| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,659,058 | 0 | T | C | 24.2% | 169.9 / 16.8 | 93 | D38G (GAT→GGT) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| Reads supporting (aligned to +/- strand): ref base T (50/19); new base C (0/22); total (51/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.48e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACA > CP009273/3658924‑3659194 | gTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGc > 1:3385360/1‑139 (MQ=255) aaTGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACGCACTTATCTACTCGAATTT‑GGCTTGCATCCGCa < 1:4308459/138‑1 (MQ=255) agaaACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGAATCGGGAGAAATAATGAAAGCGTGTCCCTTTACACGAATACAAAATTTTC‑AACACCCTTATCTACCCGAATTT‑GGCTTGCATCCGCAAAAAc < 1:4342719/138‑1 (MQ=255) aaaCTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAg > 1:206119/1‑139 (MQ=255) aaaCTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAg > 1:4218755/1‑139 (MQ=255) aaCTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAgg > 1:2753977/1‑139 (MQ=255) ttATGTCAATAAAGATTTAATCCCCCCTCCTTGACCATCGGGAGAAATAATAAAAGCGTTTCCCTTGACACGAATACAAAATTTTC‑AACCCACTTATCTACTCAATTTG‑GGCTTGCACCCGAAAAACCCAGGTC‑A‑CCGc < 1:3260032/139‑1 (MQ=255) aTTTAACGCCCCCTCCTTGAGCATCGGGAAAAATAATGAAAGCGTGTCCCTTGACAAAAATAAAAAATTTTC‑AACACCCTTATCTTCTAAATTTT‑GGCTTGCCCCCCAAAAAACCAGGTC‑A‑CCGCCAt < 1:2658728/128‑1 (MQ=255) tttAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGat > 1:1033612/1‑139 (MQ=255) tttAATCCCCCCCCCTTAGCCATCGGAAAAAATAATAAACGCGGTCCCCTTGCCA‑AAAAAAAAAATTTTCAAACACTCTTATCTACGCATTTTT‑GGTTTACACCCGCAAACACCAGTTC‑A‑CCGCCATTAAAATAGCg < 1:3182252/137‑1 (MQ=255) aaTGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGatat > 1:249503/1‑138 (MQ=255) tccctcctcctTGAGCATCGGGAAAAATAATAAAAGCGTGCCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCAAAAAACCCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCa < 1:1213913/137‑1 (MQ=255) tcccccctcctTGAGAATCGGAAAAAAAAATGAAAGCGTGTCCTTGGCAACAAAAAAAAAATTTCC‑AACACACTTATCTCCTAAAATTT‑GGTTTCCACCCAAAAAACCCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCa < 1:2920609/134‑1 (MQ=255) cctcctcctTGACCTTGGGGAGAAATAATGAAAGCGTGTCCTTTGACACAAAAACAAATTTTTC‑ACCACACTTATCTACTCAAATTT‑GGTTTGCATCCAAAAAACCCGGGTC‑T‑CCGCCATTAAAATAGCGATATTCAcc < 1:1260661/139‑1 (MQ=255) tcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTacac > 1:1697374/1‑120 (MQ=255) tcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCg > 1:486111/1‑128 (MQ=255) tcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAAAACAAAATTTTC‑AACACACTTATCTACGCGAATTT‑GGCTTGCAGCCTCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCAt > 1:3680006/1‑139 (MQ=255) cctcctTGAGCATCGGGAGAAATAATGAAAGAGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCAtt > 1:1912299/1‑139 (MQ=255) ctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATa > 1:880743/1‑123 (MQ=255) gAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTCCTCGAATTT‑GGCTTGCATCCGCAAAACCCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATg > 1:3040321/1‑139 (MQ=255) cATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATAtt > 1:613658/1‑122 (MQ=255) cATCGGGAAAAATAAAGAAAGCGTGTCCCTAGACACGAATAAAAAATTTTC‑AACACACTTATCTCTTCAAATTT‑GTCTTGCACCCGAAAAACCCAGTTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg < 1:4012867/139‑1 (MQ=255) cacGGGAAAAATAATAAAAGGGTGCCCCTTGACAACAATAAAAAATTTTA‑AACCCACTTTTCCAATCAAATTT‑GGTTTGCAACCGAAAAAACCGGGTT‑A‑CCGCCATTAAAATAGCGATATTCACCATTATCCATGGTga < 1:1216837/137‑1 (MQ=255) atggggAAAAATAAGGAACGCGTGCCCCTTGACACGAATAAAATTTTTAA‑AACCCTCTTATCTACTCAATTTT‑GGCTTTCATCCGAAAAACCCAGGTC‑G‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGt < 1:718615/134‑1 (MQ=255) aTCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTAAATTTG‑GGCTTGCATCCACAAAACCCGGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGt < 1:1213804/137‑1 (MQ=255) tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgag > 1:3388332/1‑139 (MQ=255) tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgag > 1:79651/1‑139 (MQ=255) tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGATC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGGgag > 1:4332695/1‑139 (MQ=255) ggtgagaATAAATGAAATCGTGTCCTTGCACAAGAATAAAAATTTTCC‑AACACCTTTATCTCCTCGAATTG‑GCCTCGTATCC‑AAAAAACCTAGTCAA‑CCGCCATTAAAATAGCGATAGTCACCATTAACCATGGTgaga < 1:564221/136‑1 (MQ=255) cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAAc > 1:1461703/1‑129 (MQ=255) cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgaga > 1:1842671/1‑139 (MQ=255) cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgaga > 1:2869476/1‑139 (MQ=255) cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGCC‑A‑CCGCCATTAAAATAGCGATATTCCCCATTAACCATGGTgaga > 1:2520481/1‑139 (MQ=255) aaagaaaaTAATAAAGGCGTTTCCTTTGAAACAAATAAAAAATTTTC‑ACCACCCTTCTCTACTCGATTTT‑GGTTTGCTCCCACAAAAACCAGGGC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa < 1:1874085/134‑1 (MQ=255) ggAAAAATAATGAAAGCGTGCCCTTTGACACGAAAAAAAAATTTTC‑ACCCCCCTTATCTACTAAATTTT‑GGCTTCCACCCGAAAAAACCAGGTA‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa < 1:2965181/138‑1 (MQ=255) aaaTAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCCCAAAAAc < 1:3971761/84‑1 (MQ=255) aatGAAAGCGTGTCCCTTGACACGAATAAAAAATTTTC‑AACACACTTATCTACTCAAATTT‑GGCTTGCATCCGAAAAACCCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCAcc < 1:445050/113‑1 (MQ=255) gAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCAt > 1:2345417/1‑67 (MQ=255) aGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg > 1:4044211/1‑134 (MQ=255) aGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCtt > 1:2652454/1‑138 (MQ=255) aGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGGC‑A‑CCg > 1:1801503/1‑84 (MQ=255) tttCCCTTTACACCAATACAAATTTTTC‑AACCCTCTTTTCTACTCGATTTT‑GGCTTTCACCCCCAAAAACAGGGTC‑A‑CCTCCATTAAAATAGCGATATTCCCCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:1509146/137‑1 (MQ=255) tgtCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATg > 1:2617705/1‑113 (MQ=255) acccccTTGCCACGAATAAAAATTTTTC‑ACCCCCCTTATCTTCTCGATTGT‑GGTTTGCCCCCACAAAAACCAGGTC‑G‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:4262380/136‑1 (MQ=255) tccccTTGACACGAATAAAAAATTTTC‑AACCCCCTTTTCTACTCAAATTT‑GGCTTGCATCCCAAAAACCCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:344199/136‑1 (MQ=255) gtCCTTTGACACGAATACAAATTTTTC‑AACACACTTATCTACTCGAATTG‑GGCTTGCATCCGCAAAACCCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:2049018/138‑1 (MQ=255) gtCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCACCCGAAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:230046/138‑1 (MQ=255) gtCCCTTGAAAGAAATACAAAATTATC‑ACCACTCTAATCTACTCGAATTG‑GGCTTGCATCCGCAAAACCCAGGCC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:868278/138‑1 (MQ=255) gtCCCTTAACACAAAAACAAAATTTAC‑ACCACATTTATCTCCCCAATTGT‑GGCTTGCATCCAAAAAAACAGGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:2440938/138‑1 (MQ=255) ctCCTTTGACACAAATAAAAAATTTAC‑AACACCCTTATCTCCAAAATTTT‑GGCTTGCCCCCGCAAAAACAAGGAC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:4264579/137‑1 (MQ=255) cccccTTAACACAAAAAAAAAATTCCA‑AACACATTTATCTAC‑CAAATTTGGGTTTCCACCCACAAAACCCGGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:3205571/136‑1 (MQ=255) tCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTAGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc > 1:2648478/1‑138 (MQ=255) gACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTTCATCCGCAAAAACCAAGTC‑A‑CCGCCATTAAACTAGCGATATTCACCATTAACCATGGTGAGAatatgt > 1:2536785/1‑115 (MQ=255) acGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc > 1:661921/1‑139 (MQ=255) gaaaaaaaaaTTTCA‑AACACCCTTTCCTCCTCAATTTT‑GGCTTCAACCCAAAAAAACCGGGCC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa < 1:2252849/133‑1 (MQ=255) aaaaaCAAAATTTTT‑AACCCCCTTATCCCCCCAAATTG‑GGCTTGC‑CCCCAAAAAACCAAGTC‑ATCCGCCATTAAAATAGCGATATTCACCATTACCCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa < 1:2163175/135‑1 (MQ=255) aaTACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa > 1:2092723/1‑135 (MQ=255) aaTACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAt > 1:1859838/1‑139 (MQ=255) tACAAAATTTTA‑AACACACTTATCTACTCGAATTG‑GGCTTGCATCCGAAAAACCCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa < 1:597133/136‑1 (MQ=255) tcc‑AACACCCTTATCTACACAATTTT‑GGTTTCCACCCAAAAAACCCGGGAC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGt < 1:3347004/137‑1 (MQ=255) ttaaaCACACTTATCTACTCAAATTT‑GGTTTGCATCCGAAAAAACCGGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:1445361/111‑1 (MQ=255) tC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa > 1:2769584/1‑136 (MQ=255) c‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGa > 1:1821785/1‑139 (MQ=255) ccTTATCTCCTCGAATTT‑GGTTTCCATCCGCAAAACCCGGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa < 1:1417589/118‑1 (MQ=255) acTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt > 1:2483478/1‑139 (MQ=255) acTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt > 1:1175492/1‑139 (MQ=255) ttATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa > 1:3616363/1‑114 (MQ=255) tttctcCTCAATTTT‑GGTTTGCACCCAAAAAACCCGGGCC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 1:3887093/137‑1 (MQ=255) tATCTACTCAAATTT‑GGCTTCCCTCCCCAAAACCCCGGTC‑C‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 1:475849/139‑1 (MQ=255) tACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTg > 1:117209/1‑137 (MQ=255) acccGAATTT‑GGCTTGCACCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACt < 1:597570/136‑1 (MQ=255) acacGATTTT‑GTCTTACACCCACAAAACCGAGGCA‑C‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACt < 1:2379137/136‑1 (MQ=255) aCTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATg > 1:2777434/1‑72 (MQ=255) aCTCGAATTT‑GGCTTGCACCCGAAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACt < 1:1216895/139‑1 (MQ=255) cTCAAATTG‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATAtt < 1:826647/57‑1 (MQ=255) tCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat > 1:1256458/1‑82 (MQ=255) tCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg > 1:3820853/1‑87 (MQ=255) tCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa > 1:3588660/1‑119 (MQ=255) tCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTa > 1:147558/1‑139 (MQ=255) tCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGGGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg > 1:3459525/1‑117 (MQ=255) gAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAat > 1:4210757/1‑139 (MQ=255) gAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAat > 1:3855294/1‑139 (MQ=255) gAATTT‑GGCTTGAATCCGCAAAAACCAGGGC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACAATGGTAAGAATATATTTATGTCTTGCATAAGCAATTAGACATTTCCCATTTAGTGATTGCATAGTTGCCTTAat > 1:928100/1‑139 (MQ=255) tttt‑GCCTTCCACCCCAAAAAACCAGGCC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat < 1:3992020/138‑1 (MQ=255) ttt‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGt > 1:1794443/1‑116 (MQ=255) ggCTTGCACCCGAAAAACCCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGa < 1:1055872/115‑1 (MQ=255) gCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAAc > 1:2998728/1‑57 (MQ=255) gCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa > 1:1984654/1‑110 (MQ=255) gCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAg > 1:489055/1‑122 (MQ=255) gCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCAGGGAGAGAatatat > 1:915869/1‑73 (MQ=255) cTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTc > 1:1456510/1‑79 (MQ=255) cTTGCACCCAAAAAACCCAGGTA‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt < 1:479832/138‑1 (MQ=255) cATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACg > 1:1750459/1‑84 (MQ=255) aTCCGAAAAAACCAGTTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACa < 1:2041005/138‑1 (MQ=255) | GTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACCAGGTC‑A‑CCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACA > CP009273/3658924‑3659194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |