| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,351,352 | 0 | A | G | 23.4% | 111.3 / 11.0 | 64 | S134P (TCC→CCC) | cadC | cadBA operon transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base A (35/14); new base G (0/15); total (35/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGATATA > CP009273/4351215‑4351487 | tGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGGGGCGTTGCGGTG‑TTTTAAATGTTAAGAC‑TGTgggag > 1:4217311/1‑139 (MQ=255) gAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGGGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTgggagg > 1:3322815/1‑139 (MQ=255) gAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTgggagg < 1:3133601/139‑1 (MQ=255) tACCAGTGCTACACAGATTCCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCt < 1:1151245/139‑1 (MQ=255) tACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGAAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGaa > 1:2490275/1‑136 (MQ=255) tGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAAt < 1:255259/131‑1 (MQ=255) gCTACACAGATCCCTAACGACAACAGGAAAAAAAACCATACCAAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTAAAGAC‑TGTGGGGGGGAGAATCTGTgga < 1:3271263/137‑2 (MQ=255) aTACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGTGAGAATCTGTGGGAGGAACCGcg > 1:4262178/1‑137 (MQ=255) aTACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAgg > 1:2428207/1‑131 (MQ=255) tcccaaaCGACAAAAGGAAAAAAAACCATCCCAAAAAGGTAGTGAATCGTTTTCTTTTAGCGGGGGTTTGTTCGGGGGGTGTGGGGGTG‑TTTGGAATGTTAAGCC‑GGGGGGGGGGAAAATCTGGGGCAGGAACCGcc < 1:4125536/132‑1 (MQ=255) tcccaaaCGAAAAAAGGAAAAAAACCCATACCCAAAAGGTAGTGAATCTTTTGCTTTAAACGGGGGATTGTTCAGGTGGCGTGGGGGTG‑TTTTGAATGTAAAGAC‑TGGGGGGGGGAAAATCTGTGGCAGAAACCGCctc < 1:3221238/134‑1 (MQ=255) tACCTAACGAAAACAGAAAAAAAACCCATCCCCAAAAGGTAGTAATTCTTTTGTTTTTAACGGGGGTTTTTTCAGGGGGCGTTGCGTTG‑TTTTGATTTTTAAGAG‑GGGGGGGGGGAGAATCTGTGGCAGGAACCGCct < 1:3240139/138‑1 (MQ=255) tACCTAAAGACAAAAGGAAAAAAACCCATCCCCAAAAGGTAGTGAATCGTTTGTTTTTAACGGGGGATTGTTCAGGGGGCGTTGCGGTG‑TTTTAAATGTAAAGAC‑TGGGGGGGGGAGAATCTGTGGCAGGAACCGCctc < 1:1954297/139‑1 (MQ=255) cccaaaCGAAACCAGAAAAAAAACCCATCCCAAAAAGTTAGTGAATCGTTTGTTTTTAACTGGGGATTGTTCAGGGGGCGTTGGGGTG‑TTTTGAATGTAAAGCC‑GGGGGGGGGGGGAATCTGTGGCAGGAACCGCctct < 1:1945541/135‑1 (MQ=255) tAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGt > 1:2593120/1‑139 (MQ=255) tAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGt > 1:1808274/1‑139 (MQ=255) cGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCTTTTGTTTTTAACTGGGGATTGTTCAGGGGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGGGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGtata < 1:2029767/139‑1 (MQ=255) cGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGtata > 1:2926783/1‑139 (MQ=255) acaacaGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAgg > 1:3955118/1‑139 (MQ=255) aacaGGAAAAAAAACCATACCCAAAAGGGAGTGAATCGGGTGCTATTAACTGGGGATTGTTCAGGGGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGGGGGAGGGAGAATCTGTGACAGGAACCGCCTCTGGTATAgggg > 1:1654566/1‑139 (MQ=255) gAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGc > 1:346025/1‑139 (MQ=255) aaaaCCATCCCAAAAAGTTAGTGAATCGTTTGTTTTTAACTGGGGATTGTTAAGGTGGCGTTGCGGTT‑TTTTGAATGTTAAGAC‑GGTGGGGGGGAGAATTTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGa < 1:1214373/139‑1 (MQ=255) aaaCCATCCCCAAAAGGTGGTGATTCGTTTGCTTTTACCTGGGGGTTGTTCGGGGGGGGTTGGGGTG‑TTTTGAATTTTAAGAG‑TGGGGGGGGGAGATTCTGTGGAAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGAt < 1:2518828/139‑1 (MQ=255) aaaCCACACCCAAAATGTAGTAAATCTTTTGTTTTAAACGGGGGTTTTTTTGTGTGTCTTTG‑GGTGTTTTTAAATGTTAAGCT‑TGGGGGGGGAAGATCCTTTGGCAGGACCCGCCTCTGGTATAGGGGGAGGCGAAGAt < 1:2475625/139‑1 (MQ=255) aaCCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCTTTGCGGTT‑TTTTGAATTTTAAGAC‑TGGGGGGGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATa < 1:420428/139‑1 (MQ=255) tACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAggg > 1:56837/1‑121 (MQ=255) tACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAAACGCCTCTGGTTTAGGGGGGGGCGAAGATAGCatt > 1:2998963/1‑139 (MQ=255) tAGTGAATCGTTTGTTTTTAACTGGGGATTGTTCGGGGGGCTTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGGGGGAAAATTGGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCctct < 1:600988/137‑1 (MQ=255) gTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGtata > 1:1675007/1‑105 (MQ=255) gTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGGAGATAGCATTATTTCCTCTccc > 1:3159604/1‑138 (MQ=255) gTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTccc > 1:2240257/1‑138 (MQ=255) gTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTccc > 1:2322697/1‑138 (MQ=255) gTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGGG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAGCCGCCTCTGGGATAGGGGGAGGGGAAGATAGCATTATTTTCTCTccc > 1:2318508/1‑138 (MQ=255) tttGTTTTTCACGGGGGATTGTTAAGCTGGGGTCGCGGTT‑TTTTGAATGTTAAGTC‑CGTGGGGGGGAGGATCTGTGTATGAAACCGCCTCTGGTATAGGGGGAGGCGCAGATAGCATTATTTCCTCTCGCTCTTCTTCg < 1:145405/139‑1 (MQ=255) tttGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCttcttc > 1:3473901/1‑138 (MQ=255) tcTTTGAACTGGGGATTGGTCAGGGGGGTTGGCGTTT‑TTTAGAATGTTAAGAC‑GGGGGGGGGGAAACTCTGTGGCAGGACCCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTg < 1:3978525/138‑1 (MQ=255) gtttttACCTGGGGTTTGTTCGGGTGGCGTGGCGTTT‑TTTTGAATGTTAAGAC‑GGTGGGGGGGAGATTCTGTGGAAGAAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTg < 1:2411413/137‑1 (MQ=255) ttttAACGGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGGGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCCTCTTCGCTGt < 1:1784840/138‑1 (MQ=255) gggATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATaa > 1:916653/1‑138 (MQ=255) gggATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATaa > 1:1537146/1‑138 (MQ=255) ttGTTCAGGTGGCGTTGCGGTT‑TTTTGAATTTTAAGAC‑TGGGGGAGGGAAAATTTGTGGAAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCgg < 1:67038/138‑1 (MQ=255) ttGTTCAGGGGGGGTGGCGGGT‑TTTTTAATTTTAAGTC‑TTTGGGGGGGAAAATCTTTGGCAGGACCCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCgg < 1:2047570/138‑1 (MQ=255) ttGTGCAGGTGGCGTTGCGGTT‑TTTTGAATGTAAAGAC‑TGTGGGAGGGAGATTCTGGGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCgg < 1:317410/138‑1 (MQ=255) tGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGTAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGc > 1:3310568/1‑138 (MQ=255) gTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGCAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAAACGGCa > 1:2481588/1‑138 (MQ=255) ttCGGGTGGCTTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAAAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCg < 1:2158071/118‑1 (MQ=255) ttCAGGAGGCGTTGCGGTG‑TTTTGAATGTTAAGGC‑GGTGGGAGGGAGAATCTGTGGCAGGAACCTCATCTGGTGTAGGGGGAGGCGAGGATAGCGTTTTTTGTTCTCCCTCTTCTTCGCTGTACAAGATAACAGGCAcc > 1:2890307/1‑139 (MQ=255) gggtggtGTGGGGGTT‑TTTTG‑ATTTTAAGGCGTGGGGGAGGAAAATTTTGTGGAAGAAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCAt < 1:2327171/137‑1 (MQ=255) ggCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGTGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAAtt > 1:1204926/1‑139 (MQ=255) gCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGACTCTGTGGCAGGAACCGCCTCTGGta > 1:1961867/1‑66 (MQ=255) cGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTta > 1:1279843/1‑139 (MQ=255) gTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGa > 1:4327600/1‑118 (MQ=255) gTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTtat > 1:2043532/1‑139 (MQ=255) gTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTtat > 1:4302544/1‑139 (MQ=255) gTTGCGGTG‑GTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTtat > 1:2723400/1‑139 (MQ=255) gCGGTT‑TTTTGAATGTTAAGAC‑GGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGc < 1:149601/139‑1 (MQ=255) gCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTATCAGATAACCGGCACCATTAATTTATAg > 1:980810/1‑138 (MQ=255) gCGGTG‑TTTTAAATTTTAAGCC‑TGGGGGAGGGAAAATCTGTGGCAGAAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGc < 1:2092520/139‑1 (MQ=255) tgg‑tTTTAATTGTTAAGCC‑TGGGGGAGGTAAACGGGGTGGAAGGTACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCcg < 1:718051/136‑1 (MQ=255) tAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGt > 1:1515414/1‑139 (MQ=255) aaaaC‑TGTGGGAGGGAGAATTGGGGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTa < 1:883936/136‑1 (MQ=255) aaGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTa < 1:1669405/139‑1 (MQ=255) tgtgGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGat < 1:1302626/139‑1 (MQ=255) ggggggggggaAACTCTGGGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGat < 1:550858/136‑1 (MQ=255) tgGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGatat > 1:3920276/1‑139 (MQ=255) tgGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGatat > 1:2456851/1‑139 (MQ=255) tgGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCGGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGatct > 1:3839925/1‑137 (MQ=255) tgGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGAATAGGGGGAGGCGAAGATAGCatta > 1:2305066/1‑61 (MQ=255) gggagggaGAATCTGTGGCAGGAACCGCCTCTGGTATAgg > 1:481858/1‑40 (MQ=255) gggagggaGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGAtata > 1:2770282/1‑139 (MQ=255) gggagggaGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGAtata > 1:25916/1‑139 (MQ=255) | TGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGATTGTTCAGGTGGCGTTGCGGTG‑TTTTGAATGTTAAGAC‑TGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTATAGCCGCGCTTTGGTACAGTAGCGATATA > CP009273/4351215‑4351487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |