| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 407,471 | C→T | W156* (TGG→TAG) | araJ ← | arabinose‑inducible putative transporter, MFS family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 407,471 | 0 | C | T | 100.0% | 179.7 / NA | 52 | W156* (TGG→TAG) | araJ | arabinose‑inducible putative transporter, MFS family |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (35/17); total (35/17) | |||||||||||
GCTGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCG > CP009273/407344‑407605 | gCTGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTc < 1:2820266/138‑1 (MQ=255) cTGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTcc < 1:951736/138‑1 (MQ=255) tGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCt < 1:3274826/138‑1 (MQ=255) tGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCt < 1:3264073/138‑1 (MQ=255) tGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCt < 1:1813982/138‑1 (MQ=255) cgcAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTg > 1:647909/1‑137 (MQ=255) cgcAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTg > 1:1625241/1‑137 (MQ=255) tttCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCa < 1:736679/139‑1 (MQ=255) cTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTccc < 1:1111488/122‑1 (MQ=255) gCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTg > 1:3742355/1‑138 (MQ=255) gCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTg > 1:3013992/1‑138 (MQ=255) gtcgCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGc > 1:3283153/1‑122 (MQ=255) gcgAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTc < 1:914127/139‑1 (MQ=255) acgAATATCTGGCAACCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCaaa < 1:4058741/126‑1 (MQ=255) tCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACgctagcta < 1:2945641/78‑1 (MQ=255) ggCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTg > 1:1888655/1‑127 (MQ=255) cAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATc > 1:1739558/1‑138 (MQ=255) aaaaaTAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGGGTAACGCTAg > 1:162083/1‑65 (MQ=255) aaaaaTAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGGGTAACGCTAGCTAAATTCCTGAc > 1:773475/1‑78 (MQ=255) aaaTAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACgctagcta < 1:3230924/66‑1 (MQ=255) cGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAAGGCCCAGCAAATTGGCGCCGGTCATCCCGGAAACCATCCCCGCCAcgg > 1:631031/1‑137 (MQ=255) aTGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGAc > 1:1059177/1‑66 (MQ=255) aTGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCAcggcggc > 1:161077/1‑139 (MQ=255) tGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGcc < 1:4111800/90‑1 (MQ=255) tGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCAcggcggcg > 1:2916237/1‑139 (MQ=255) cGCAATATTAAAAACAGCGATCAATAAAAAGGAGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGGGACttt > 1:2429988/1‑138 (MQ=255) gCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTg > 1:1941868/1‑90 (MQ=255) tatTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTc < 1:3939200/95‑1 (MQ=255) ttAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCa < 1:1065371/64‑1 (MQ=255) aaaaCAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGa > 1:524166/1‑139 (MQ=255) agggATCAATAAAAAGTTGACACGCTAGCTAAATTCCTGACTTAAATAGGTTCCGAGCGAGATGCGCAGCAAACAGACGTCTGTCATCGCGGAAACAATCACCGCCACGGGCGCGTTGACTTTTGCGTGTTTGATaaat > 1:3897745/4‑137 (MQ=255) aGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGaaa > 1:1768891/1‑95 (MQ=255) aGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtt > 1:424692/1‑139 (MQ=255) aGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGCTTGATAAtt > 1:340393/1‑139 (MQ=255) aGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCATGACTTAAATACGTTCCCAGCGGAATGGCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtt > 1:283572/1‑139 (MQ=255) cGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGcc > 1:3237104/1‑64 (MQ=255) cGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGTCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtttt > 1:561717/1‑139 (MQ=255) cGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtttt > 1:1008276/1‑139 (MQ=255) gATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGCCTTAAATCCGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAttttt < 1:1571623/139‑1 (MQ=255) tAAAAAGGTGTATCGTTAGCTAAATTCCTGTCTTAAATCCGTTCCCAGCGGAATCCCCAGCAACTTGGCGATTTTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTTATAAttttt < 1:561612/133‑1 (MQ=255) tAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGaaa < 1:1675658/86‑1 (MQ=255) aaaGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGAAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTc < 1:1114654/113‑1 (MQ=255) gtgtAACGCTAGCTAAATTCCTGACTTAAAAGCGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAACCCCTCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGa < 1:1690661/118‑1 (MQ=255) tgtAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATc > 1:3357049/1‑137 (MQ=255) tgtAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGGTTGATAATTTTTGATAACACGATCg > 1:2490056/1‑138 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGcc > 1:1831040/1‑87 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGc > 1:3846157/1‑86 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGa > 1:2734136/1‑133 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCt > 1:1875231/1‑138 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCt > 1:1757964/1‑138 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGGTTGATAATTTTTGATAACACGATCGCt > 1:2309732/1‑138 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGAATGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGGGACTTTTCCGGGTTTGATAATTTTTGATAACACGacggct > 1:727872/1‑133 (MQ=255) aCGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGGTTGATAATTTTTGATAACACGATCGCTCCg > 1:2533235/1‑139 (MQ=255) cGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGAt > 1:3286311/1‑113 (MQ=255) | GCTGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCG > CP009273/407344‑407605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |